PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G31020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 353aa    MW: 37768.9 Da    PI: 7.9118
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G31020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.47e-2576120145
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                   d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  OB04G31020.1  76 DPEPGRCRRTDGKKWRCSKEAAPDSKYCERHMHRGRNRSRKPVEA 120
                   79****************************************996 PP

2QLQ59.21.2e-201550237
           QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                  +FTaaQ ++L++Q+l+yKyL+a++PvP++Ll++i++
  OB04G31020.1 15 PFTAAQYEELEQQALIYKYLVAGVPVPADLLLPIRR 50
                  9*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.4E-111450IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.1871550IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.5E-141549IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.51776120IPR014977WRC domain
PfamPF088793.5E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMARWAAVTA AXPPPFTAAQ YEELEQQALI YKYLVAGVPV PADLLLPIRR GLDSLASRFY  60
HHPILGYGSY FGKKLDPEPG RCRRTDGKKW RCSKEAAPDS KYCERHMHRG RNRSRKPVEA  120
QLAAPHSQAP ATAPAAVTTT AFQNHSLYPA IANGGGGGGG ALMAAGGGGG GCGGSAPGSF  180
ALGSNTQLHM DNAASYSTAA GAGNKDFRYS AYGVRPLADE HNPLITGAMD TSIDSSWRLL  240
PPQTSAFSVS SYPMLGNLSD LDQNTICSLP KAEREPLSFF GSDYVTVDSG KQENQTLRPF  300
FDEWPKARDS WPELADDNSL ASFSATQLSI SIPMATSDFS TTSSRSPNGI YSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G31020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2414390.0AK241439.1 Oryza sativa Japonica Group cDNA, clone: J065162G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652759.10.0PREDICTED: LOW QUALITY PROTEIN: growth-regulating factor 3-like
SwissprotQ6AWY60.0GRF3_ORYSJ; Growth-regulating factor 3
TrEMBLJ3M1270.0J3M127_ORYBR; Uncharacterized protein
STRINGOB04G31020.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24633476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-45growth-regulating factor 5