PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G30570.1
Common NameLOC102701912
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 364aa    MW: 39196.1 Da    PI: 4.6693
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G30570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.8e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G  +W++ ++  g+ R++k+c++rw +yl
     OB04G30570.1 16 KGSWTPEEDMRLVAYIQKYGHANWRALPKQAGLLRCGKSCRLRWINYL 63
                     799*****************************99************97 PP
2Myb_DNA-binding53.36.2e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
     OB04G30570.1  69 RGNFTAEEEETIIKLHGMLGNK-WSKIASCLP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.031163IPR017930Myb domain
SuperFamilySSF466891.16E-3013110IPR009057Homeodomain-like
SMARTSM007174.0E-131565IPR001005SANT/Myb domain
PfamPF002493.7E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241770IPR009057Homeodomain-like
CDDcd001674.81E-111863No hitNo description
PROSITE profilePS5129424.66764118IPR017930Myb domain
SMARTSM007176.3E-1568116IPR001005SANT/Myb domain
PfamPF002494.3E-1569114IPR001005SANT/Myb domain
CDDcd001671.77E-1171114No hitNo description
Gene3DG3DSA:1.10.10.603.0E-2671117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGKGRAPCCA KVGLNKGSWT PEEDMRLVAY IQKYGHANWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IKLHGMLGNK WSKIASCLPG RTDNEIKNVW NTHLKKRVSP  120
EPKKGGGKSK KKTTCTDVLV PSPSPASSTT TTNCSIGDSA GEQSNTSKEE EEEEEETAGK  180
VEIPMLDPCS FDFDMLVDPV APELYCPAVS TAPTSPCSST SPACARGVDA LLDLPDIDLG  240
PELWSIIDGD GYGASVCTDA PPPAWSNAAA AACQANATVA TTSQEEAKAE WWLEDLEKEL  300
GLWGPTDDYH CHPSGPQCQP ARVGPPPAVV EDPVSCYFQG GPTPATWQGP ETPAVITSNS  360
MDYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-281411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G30570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1119600.0AK111960.1 Oryza sativa Japonica Group cDNA clone:001-031-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653723.10.0PREDICTED: myb-related protein Zm1-like
SwissprotP200241e-107MYB1_MAIZE; Myb-related protein Zm1
TrEMBLJ3M0Y20.0J3M0Y2_ORYBR; Uncharacterized protein
STRINGOB04G30570.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.14e-69myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]