PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G29880.1 | ||||||||
Common Name | LOC102715571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 463aa MW: 51186.1 Da PI: 6.9244 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.4 | 2.5e-16 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++l+++a +++G W++I +++g ++t+ q++s+ qk+ OB04G29880.1 59 REKWTEDEHKLFLEALQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 103 789*****************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.84E-15 | 53 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.318 | 54 | 108 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 56 | 110 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-15 | 57 | 106 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.8E-13 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 59 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.52E-10 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MARFQETKAM NDKGHVADHV GHQDLMEKLT DPLDSGVMDM MDEARIPKAR KPYTITKQRE 60 KWTEDEHKLF LEALQLHGRA WRRIQEHIGT KTAVQIRSHA QKFFSKVIKE SSGDNCNSLG 120 AAPSIQIPPP RPKRKPVHPY PRKLGSTASK NVSALKQLEK PQLQVQSLYD QDNGSPTSVL 180 TVAQIRHDTL GSDSGGSPAS TIDIEERSPT PSTTTAELAV ELPPANAEEV KGNGNCKEVT 240 CDKSGAPVLR LFGKRVMVSD LHQMSTPDTG NLQTVADMEV DASAETPTSG TGKFSCHGAA 300 EANTWNPWLT NTHQFLYYLP NGQFFSVHSA LPCFSYHTEG ASSPQMSHPQ VVASNQHHQH 360 QAYEAVDYKC MQREGSWTES HSASSSVAET TARNSETTES YRNGDRNNDW MIPLPDSRKY 420 VSPGSNCKRG FVPYKRCVAD SEALLKSQAP QEEADGEMTR LCL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G29880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101209 | 0.0 | AK101209.1 Oryza sativa Japonica Group cDNA clone:J033031A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652697.1 | 0.0 | PREDICTED: uncharacterized protein LOC102715571 | ||||
TrEMBL | J3M0R3 | 0.0 | J3M0R3_ORYBR; Uncharacterized protein | ||||
STRING | OB04G29880.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2722 | 36 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37260.1 | 4e-34 | MYB_related family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102715571 |