PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G29740.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 336aa    MW: 35666.1 Da    PI: 4.6874
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G29740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.54.3e-22112183168
                   EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 
                   f+kv tpsdv+k++rlv+pk++ae++    +  +e++  l++ed++g+ W+++++y+++s++yv+tkGW++F
  OB04G29740.1 112 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRF 183
                   89***************************955556889*********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-31104183IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-21109183IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-18110183No hitNo description
PROSITE profilePS508638.966112183IPR003340B3 DNA binding domain
SMARTSM010191.0E-7112205IPR003340B3 DNA binding domain
PfamPF023624.2E-19112183IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEFATTSSRF SKGEEEEEEG EQEMEMEQEQ DEEEDEVEAE AEASPREIPF MTAAAAATAS  60
SSSPTSVSPS SAAASTSASG SPFRSSDGAG ASGSGGGGGG NDVEVIEKEH MFDKVVTPSD  120
VGKLNRLVIP KQHAEKYFPL DSAANEKGLL LSFEDRTGKL WRFRYSYWNS SQSYVMTKGW  180
SRFGFDFRNV NSAVPARQLV FFGSPGIPPH PPLPPPPPPL HFTVQPSPVV TSGLPMVLDS  240
VPHVNNPAAA AKRVRLFGVN LDNPHPDGGQ SSGHGQDANA LSLRMPGWQR PAPLRSQELP  300
PHFSAGAAGA ESSAASSPSS SSSSKREAHS SLDLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-46107183379B3 domain-containing transcription factor NGA1
5os9_B7e-46107183379B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G29740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066880.0AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence.
GenBankAL6629870.0AL662987.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691551.11e-151PREDICTED: B3 domain-containing protein Os04g0581400-like
SwissprotQ7F9W21e-60Y4814_ORYSJ; B3 domain-containing protein Os04g0581400
TrEMBLJ3M0P90.0J3M0P9_ORYBR; Uncharacterized protein
STRINGOB04G29740.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-45B3 family protein
Publications ? help Back to Top
  1. Je BI, et al.
    RAV-Like1 maintains brassinosteroid homeostasis via the coordinated activation of BRI1 and biosynthetic genes in rice.
    Plant Cell, 2010. 22(6): p. 1777-91
    [PMID:20581303]