PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G29390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 227aa MW: 23994.4 Da PI: 10.1162 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 80 | 2.2e-25 | 137 | 181 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+ OB04G29390.1 137 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPMEA 181 69***************************************9997 PP | |||||||
2 | QLQ | 51.5 | 3.1e-18 | 70 | 106 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 sa+T +Q q+L++Q+l+y+++aa+ PvP +L+++i+k OB04G29390.1 70 SALTFMQRQELEHQVLIYRCFAAGSPVPVHLVLPIWK 106 799*********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.6E-5 | 70 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.619 | 71 | 106 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 9.9E-11 | 71 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.072 | 137 | 181 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.8E-21 | 138 | 179 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MLAEGRQVYS PPPSKLPRLS GTEPNDGVVT MAAPSPLVLG LGLGVGGSGS DSSGSDAEAS 60 AVTMREGRPS ALTFMQRQEL EHQVLIYRCF AAGSPVPVHL VLPIWKSVAA ASSFGPQSFP 120 SLTGLGSLCF DYRSSMEPEP GRCRRTDGKK WRCSRDVVPG HKYCERHVHR GRGRSRKPME 180 ASVPVAPTSL PVRPALHTAA SAPSPPRLGF SSDGASVLLA HTTARAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 170 | 178 | GRGRSRKPM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G29390.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK110934 | 0.0 | AK110934.1 Oryza sativa Japonica Group cDNA clone:002-173-G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691549.1 | 1e-124 | PREDICTED: growth-regulating factor 12-like | ||||
Swissprot | Q6AWX7 | 1e-117 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | J3M0L4 | 1e-161 | J3M0L4_ORYBR; Uncharacterized protein | ||||
STRING | OB04G29390.1 | 1e-162 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 2e-35 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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