PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G29050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | HSF | ||||||||
Protein Properties | Length: 472aa MW: 52290.7 Da PI: 5.7233 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.6 | 1.3e-35 | 130 | 221 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y ++ed++++++isw+++g++fvv+ + efa+++Lpk+Fkhsnf+SFvRQLn+YgFkkv ++ weF+++ Fk+g+k+ll i+ OB04G29050.1 130 FLTKTYAMVEDPSTDDTISWNDSGTAFVVWRPAEFARDLLPKHFKHSNFSSFVRQLNTYGFKKVVADR---------WEFANDCFKRGEKHLLGGIQ 217 9****************************************************************999.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k OB04G29050.1 218 RRKG 221 *986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 5.2E-57 | 126 | 219 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 6.0E-38 | 126 | 219 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.18E-34 | 126 | 219 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.2E-19 | 130 | 153 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.4E-31 | 130 | 219 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-19 | 168 | 180 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 169 | 193 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.2E-19 | 181 | 193 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MADNDEEAAA ATTESSRAKL PMGSLYEGAM FVLFEMVVLE LALVLGQSPA QMRARHTNLE 60 KGREPSRTRW MLLGLSLTNP HPQIPFLDAL SILWKQLRSL DLHLRLPPSQ GALFPARFPM 120 ASPAAGTPPF LTKTYAMVED PSTDDTISWN DSGTAFVVWR PAEFARDLLP KHFKHSNFSS 180 FVRQLNTYGF KKVVADRWEF ANDCFKRGEK HLLGGIQRRK GSGTGAVTPA GGIPTAIPIS 240 SPPTSSGGEP AXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXARARRLC DGVRRLVSRY 360 DHGGGEEEKE GDEGSVGKPM LFGVAIGAKR PREENGEDEE DDGGADEEDG EDEDEEDDDE 420 RHAARRGGPV REGKARRTEL SDLDVLALSV RAAAAARSGS GRGSRDRKSS VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-26 | 120 | 222 | 11 | 123 | Heat shock factor protein 1 |
5d5u_B | 7e-26 | 119 | 219 | 18 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-26 | 119 | 219 | 18 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-26 | 119 | 219 | 18 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G29050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY344483 | 1e-172 | AY344483.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691545.1 | 1e-128 | PREDICTED: heat stress transcription factor B-2a-like | ||||
Swissprot | Q7XRX3 | 3e-77 | HFB2A_ORYSJ; Heat stress transcription factor B-2a | ||||
TrEMBL | J3M0I0 | 1e-171 | J3M0I0_ORYBR; Uncharacterized protein | ||||
STRING | OB04G29050.1 | 1e-172 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 8e-49 | HSF family protein |
Publications ? help Back to Top | |||
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