PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28900.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 642aa    MW: 66917.7 Da    PI: 7.6318
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05193215123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C+ C+k F r  nL+ H r H
  OB04G28900.1 193 FVCEVCNKGFQREQNLQLHRRGH 215
                   89*******************88 PP
2zf-C2H212.20.00056270292123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC++C+k++  +s+ k H + +
  OB04G28900.1 270 WKCEKCSKRYAVQSDWKAHSKIC 292
                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.48E-7192215No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6192215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0041193215IPR015880Zinc finger, C2H2-like
PfamPF121714.2E-5193215IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.094193215IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-4258291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.48E-7265290No hitNo description
SMARTSM00355130270290IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MASNSSAAAA AAFFGISRDG DQHDQIKPLI SQQQQQQLAA ALPGVVAATP TAASSQGAPA  60
AAPPAKKKRN LPGNQSIHRI LTSNQVPFTI SVMHAYISVL QDLVSIDWSL IICRSGRGGD  120
SAVAEDAAGD EPVRVRGVQQ GVPAGAEPAA APARAQPAVE AEAEEPGAGA APPHPDAEVI  180
ALSPKTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPAQAQ RRRVYLCPEP  240
TCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCEKCSKRYA VQSDWKAHSK ICGTREYRCD  300
CGTLFSRVRV LFGRAHSLEL VAASSLRKEE PNARREGEED EEHVCVHSVT LPCGPTFIMG  360
QRVSSSPVDF GDDAGNGQHS FLQAKPFHGL MQLPDLQGNG AGGPGAPGAN LFNLGFFANN  420
GNSSGSSHEH ASQGLMSNDQ FSGGAGGGGG SDASAAGIFG GNFVGGEHVS PAGLYNDQAA  480
MLPQMSATAL LQKAAQMGAT SSANGAGSMF RGFAGSSPHM RPASQHLDQS DAHLNDLMNS  540
LAGGGVNTAA MFGATNGGTV PGAGMFDPRL CDIEHEVKFS QGGGGAGAGT GDGTRDFLGV  600
GGGGIVHGMS TPRGDHHQSS SDMSSLEAEM KSASSFNGRR MP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-22266307344Zinc finger protein JACKDAW
5b3h_F3e-22266307344Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691544.10.0PREDICTED: protein indeterminate-domain 13-like
TrEMBLJ3M0G50.0J3M0G5_ORYBR; Uncharacterized protein
STRINGOB04G28900.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-81indeterminate(ID)-domain 12