PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28320.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 317aa    MW: 35100 Da    PI: 5.0543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM323.6e-102975349
           NAM  3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                    frF+Ptd elv +yL ++++++    ++ i e+++yk++P +L  
  OB04G28320.1 29 NAFRFKPTDRELVENYLLPRLQRRLAVPNDRIIEANVYKLHPAKLVD 75
                  679*******************999776688**************62 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-112482IPR003441NAC domain
PfamPF023651.3E-43077IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAQDDPKGAG GGGDEEEEEE ELDEEELLNA FRFKPTDREL VENYLLPRLQ RRLAVPNDRI  60
IEANVYKLHP AKLVDVRRFR HLQDLQDIEE EKRGGGKHQH RRRALHVGAQ AGRGDGSQPQ  120
RQVRGRYVAQ EAPEVAQNEQ ASSAQRLLAA PAYNGGSPPV HRLQVQPPNV PPPQPALHPQ  180
AAPASGNSFG QSPTTMTQPR PPSPVQPHPQ QWPPAAETPA MQEKRVLEQM MAEYLHLLDA  240
DESRGRGAQE WEMRSQPQCS DAAECNDGGE KLSSAEVATT EVRPDGGDRL EHDAPVGPQL  300
ISIFPMLKNV SEILNFT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3M0A70.0J3M0A7_ORYBR; Uncharacterized protein
STRINGOB04G28320.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1756522