PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G28180.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 737aa    MW: 82760.7 Da    PI: 6.0818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G28180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.13.4e-071598391
          GRAS  3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
                  + L ++A+a + g+    +++Larl+++  p g+p+   a+y++ AL   la+      +  +++ ts  +++ +laa+k fs++sP+l
  OB04G28180.1 15 DELAAAAKAAEVGNSIGEREILARLNQQLPPIGKPFLHSASYLKDALLLALAD-----GHHATTRLTSLLDVALKLAAYKSFSDLSPVL 98
                  7899************************************************9.....55556666666679***************96 PP
2GRAS52.31.1e-16100171114192
          GRAS 114 iiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   iiDfd++ G+QW+++lq+La R +      +T+++s++s+   el+ t+++L++fA+ lg+pfefn++  ++++   + 
  OB04G28180.1 100 IIDFDLGVGGQWASFLQELAHRCDT----GLTTFVSATSHYPLELRLTRDNLSQFAADLGIPFEFNAINLDAFD---PV 171
                   9*********************865....59999999999***************************9554444...43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.6231173IPR005202Transcription factor GRAS
PfamPF035143.7E-14100171IPR005202Transcription factor GRAS
PfamPF048278.6E-62612737IPR006912Harbinger transposase-derived protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MKTTAAVSQQ QHLLDELAAA AKAAEVGNSI GEREILARLN QQLPPIGKPF LHSASYLKDA  60
LLLALADGHH ATTRLTSLLD VALKLAAYKS FSDLSPVLYI IDFDLGVGGQ WASFLQELAH  120
RCDTGLTTFV SATSHYPLEL RLTRDNLSQF AADLGIPFEF NAINLDAFDP VELIAPIADE  180
PYSHDLKHVT HGSNSHPPGG FVNFLSNGNS SQPINLGDDT SDGDYTRGQK RRILDWSVLG  240
YIIQMIQSKQ TTRRTINTGK MLPLSSIGPP LKTVQDKSSK SKITLRELKR GLHGFVDAYL  300
ERLEQLEPEN RKFCESDVGQ HFSLDEARDE RPIGGKQAKE KQKRKRKDEA CIIDLEDELH  360
KFVEAQNTAN EGRKEMLETQ RRVSSEKLEA RKLAYLATKE QKESAMLETY RSLMMQDTTV  420
MSEDVRSEHV LALSHPTMSD LAFSSDDSDE LDPSKVIEEC VAEQSVLDSF ASSFAVKINA  480
ALSIGVSQRQ YAARKSIRRD HVGAHQRLME DYFAEEPLYP ESMFRTRFRM NKHLFLRIVN  540
ALGQWSPYFT YRADCASRIG LSPLQKCTAA MRMLAYGTPV DALDEYFKIG KCTALECLDK  600
FAQGVIEVFG GKYLRRPTRD DVERILQVNE SRGFPGMLGS IDCMHWRWEK CPLAWRGQFT  660
RGDYVVPTMV LEAVASQDLH IWHDFFGIAG SNNDLNVLNN SPLFFDVLKG EAPQVQFSVN  720
GNEYSTGYYL ADGIYPE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G28180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2527351e-102KT252735.1 Psathyrostachys juncea clone 14 transposon Pong-like transposase-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314734.10.0uncharacterized protein LOC112270781
TrEMBLJ3M0930.0J3M093_ORYBR; Uncharacterized protein
STRINGOB04G28180.10.0(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-22GRAS family protein