PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G27470.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 450aa    MW: 49176.9 Da    PI: 7.03
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G27470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16741135
          GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C++Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  OB04G27470.1  7 CRHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGS 41
                  ****************55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-9153IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.18E-11545No hitNo description
CDDcd002026.52E-15640No hitNo description
PROSITE profilePS5011411.345740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.6E-14741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGKQGPCRHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG SLTNYTPMHA RDDIDAEEPR  60
ANKLKPPTLK LKEQKQLKKK PSHITMENGP FSDQNFRKMG DADLSNRSGS GSALSYSESC  120
APYGTSDASE MTASAQSHAW ESLVPSKKRS CVTRPKPSPV EKLAKDLNSI MHEEQLLFLS  180
GSSEEDLIYH SETPADSFEI GYGSMLLRPN SKSVEEESEA SSVPADNKSY ITSESYSGSA  240
SLVYSESKAT SNQNVITEQP KKFPVQKTDN ATRAYLHTEN QDTLENANSP LVSLDIEGKN  300
SEEIGEKTNA SKRLTRSTMN PLKRPHDTQF QSSGEVRATM WSPKRVSKSG GAMGLNCQVP  360
FMLKPGNGKD LACRGRGLNL FMLPPDKLSM LVPPQYTNDD SDQDLLLEVP PNARHPEAEL  420
LCQPSQLSSV AHSSTSEGGS AEGEGRLKQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G27470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0707290.0AK070729.1 Oryza sativa Japonica Group cDNA clone:J023063M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652600.20.0PREDICTED: uncharacterized protein LOC102708611
TrEMBLJ3M0220.0J3M022_ORYBR; Uncharacterized protein
STRINGOB04G27470.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.39e-57GATA transcription factor 26