PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G26860.1
Common NameLOC102716592
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 301aa    MW: 32170.9 Da    PI: 5.9092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G26860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.2e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+llvd+v+  G+g+W+  ++  g++R++k+c++rw +yl
     OB04G26860.1 14 KGPWTPDEDKLLVDYVQANGSGNWRMLPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++++++  G++ W+ Ia+ ++ gRt++++k++w++
     OB04G26860.1  67 RGPFTPEEHKSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNT 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.928961IPR017930Myb domain
SuperFamilySSF466891.72E-3112108IPR009057Homeodomain-like
SMARTSM007171.7E-131363IPR001005SANT/Myb domain
PfamPF002494.0E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-241568IPR009057Homeodomain-like
CDDcd001679.21E-111661No hitNo description
PROSITE profilePS5129425.33562116IPR017930Myb domain
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002491.3E-1467110IPR001005SANT/Myb domain
CDDcd001673.46E-1169112No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2669116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRTPCCDSK ALKKGPWTPD EDKLLVDYVQ ANGSGNWRML PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGPF TPEEHKSILQ LHAIVGNKWS MIAAQLPGRT DNEIKNYWNT NVKKQLRQGH  120
SAAVGEQAAL ASLGGGATSC PAARHMAQWE TARLEAEARL SLLSSTTSAA TASFAASSSS  180
SSTVAAGADH VTEAPPDIYL RLWNSEVGDS FRKSALSAGR EEEPVNASDE AVPVSAFAPP  240
GDDSSAVSNV TASAGADEYQ VFLDLAAEEL ELSSFHGRHG GFPLFPSADM LGDASLYTAF  300
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G26860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630061e-180AL663006.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24, complete sequence.
GenBankAP0149601e-180AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653621.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9M2D96e-82MYB17_ARATH; Transcription factor MYB17
TrEMBLJ3LZW10.0J3LZW1_ORYBR; Uncharacterized protein
STRINGOB04G26860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-72myb domain protein 17