PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G26360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 225aa    MW: 23160.2 Da    PI: 12.4474
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G26360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP86.65.9e-2751119270
           TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 
                   ag+ ++ +++h+kv+gR+RRvR+++ caar+F+L++eLG++ +++tie  l+qa+p+i ++tg+++ +a
  OB04G26360.1  51 AGRGRKAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKPAGQTIEGRLRQAEPSILAATGSGTHPA 119
                   788899**********************************************************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.3E-2257119IPR005333Transcription factor, TCP
PROSITE profilePS5136922.44957111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MASRDAATFQ LYRPMAMPTP AALPPSQQIT MPFTAAPVEA LVLPAPGRAA AGRGRKAKDR  60
HSKVNGRGRR VRMPIVCAAR VFQLTRELGL KPAGQTIEGR LRQAEPSILA ATGSGTHPAR  120
LPPPPPPGPR RLRRLHPRQA DAPGPRGAVV LGGAAAACRV VGRPLAVAGG AGVRVVGGAG  180
PPPQPALRPL QRRHEAASRG GVPVIAAACS SICDVIACVV ARARG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G26360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0647081e-172AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence.
GenBankAL6630191e-172AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence.
GenBankAP0149601e-172AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-172CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552301e-172CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence.
GenBankCT8317191e-172CT831719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017A04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691934.11e-84PREDICTED: LOW QUALITY PROTEIN: transcription factor PCF1-like
TrEMBLJ3LZR11e-149J3LZR1_ORYBR; Uncharacterized protein
STRINGOB04G26360.11e-149(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-27TCP family protein