PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G26360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | TCP | ||||||||
Protein Properties | Length: 225aa MW: 23160.2 Da PI: 12.4474 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 86.6 | 5.9e-27 | 51 | 119 | 2 | 70 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 ag+ ++ +++h+kv+gR+RRvR+++ caar+F+L++eLG++ +++tie l+qa+p+i ++tg+++ +a OB04G26360.1 51 AGRGRKAKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKPAGQTIEGRLRQAEPSILAATGSGTHPA 119 788899**********************************************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.3E-22 | 57 | 119 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.449 | 57 | 111 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASRDAATFQ LYRPMAMPTP AALPPSQQIT MPFTAAPVEA LVLPAPGRAA AGRGRKAKDR 60 HSKVNGRGRR VRMPIVCAAR VFQLTRELGL KPAGQTIEGR LRQAEPSILA ATGSGTHPAR 120 LPPPPPPGPR RLRRLHPRQA DAPGPRGAVV LGGAAAACRV VGRPLAVAGG AGVRVVGGAG 180 PPPQPALRPL QRRHEAASRG GVPVIAAACS SICDVIACVV ARARG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G26360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064708 | 1e-172 | AK064708.1 Oryza sativa Japonica Group cDNA clone:002-118-B01, full insert sequence. | |||
GenBank | AL663019 | 1e-172 | AL663019.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0038O10, complete sequence. | |||
GenBank | AP014960 | 1e-172 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 1e-172 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855230 | 1e-172 | CR855230.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0115K01-H0319F09, complete sequence. | |||
GenBank | CT831719 | 1e-172 | CT831719.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA017A04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691934.1 | 1e-84 | PREDICTED: LOW QUALITY PROTEIN: transcription factor PCF1-like | ||||
TrEMBL | J3LZR1 | 1e-149 | J3LZR1_ORYBR; Uncharacterized protein | ||||
STRING | OB04G26360.1 | 1e-149 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-27 | TCP family protein |