PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G25990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ARF | ||||||||
Protein Properties | Length: 629aa MW: 68601.6 Da PI: 9.5003 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 6.8e-23 | 98 | 197 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+lt+sd+++ g +++p+ +ae++ ++++ + + +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD +vF+ ++++++ OB04G25990.1 98 KTLTQSDANNGGGFSVPRFCAETIfpelnyrDEPPVQ--LIHAKDVHGEQWTFRHIYRGTPRRHLLTTGWSPFVNKKQLLAGDCIVFM--RDEGRNI 190 899******************999****987656555..79999********************************************..569999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ OB04G25990.1 191 HVGIRRA 197 *****97 PP | |||||||
2 | Auxin_resp | 117.5 | 1.1e-38 | 249 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eF+v+++ v++al+v++++GmRfkmafetedss++++ +Gt++gv+++dp+rWp+S+Wr+L+ OB04G25990.1 249 AATLATSGQPFEVLYYPRASTPEFCVRASAVRTALSVQWCPGMRFKMAFETEDSSRISWfMGTIAGVQAADPIRWPKSPWRLLQ 332 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.1E-34 | 88 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-26 | 91 | 198 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.646 | 96 | 198 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-16 | 96 | 198 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-20 | 98 | 197 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.22E-18 | 98 | 196 | No hit | No description |
Pfam | PF06507 | 1.7E-33 | 249 | 332 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MSSVPPVGAA VYYFPQGHAE QASEAVDLSS ARVPPLVPCR VVAVRFMADE ETDEVFARIR 60 LAPLRPGDAV VDVGEAAAAG EGGRQQEEDR PQPASVPKTL TQSDANNGGG FSVPRFCAET 120 IFPELNYRDE PPVQLIHAKD VHGEQWTFRH IYRGTPRRHL LTTGWSPFVN KKQLLAGDCI 180 VFMRDEGRNI HVGIRRAKRG FCGIGGDDEG LSSLPAWDQF RGLVRGNATA GGESSPTKGK 240 VPPENVLTAA TLATSGQPFE VLYYPRASTP EFCVRASAVR TALSVQWCPG MRFKMAFETE 300 DSSRISWFMG TIAGVQAADP IRWPKSPWRL LQVTWDEPEL LQNVKRVCPW LVELVSSMPN 360 LHLPSFSSPR KKPRIPPYAE FPPDAQLFNP AFPPNLMAHG HADHHHHLHH GFPFLPFPDG 420 SAQPAGIQGA RHAQFASSFP DLYIGNLQPN LMLYSGIRLP PADQAAPRPP RIISTDLTIG 480 SQLAPDEPTT SPSSSARKID NAKPTGFLLF GQAILTEQQI KNGNSGGRAS PGATRKRSLN 540 WDAEKAPNGS EGSDSAGFSE GSPTTTKGQP PPHQHAVVEV AVFWRQQKPR IRVRAGARPV 600 QGVRRVGSRR PEPRSHGSEL VRGAVRPTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 7e-69 | 1 | 353 | 63 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G25990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL662958 | 0.0 | AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence. | |||
GenBank | AL731629 | 0.0 | AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence. | |||
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691666.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10-like | ||||
Swissprot | Q01I35 | 0.0 | ARFJ_ORYSI; Auxin response factor 10 | ||||
Swissprot | Q7XKK6 | 0.0 | ARFJ_ORYSJ; Auxin response factor 10 | ||||
TrEMBL | J3LZM4 | 0.0 | J3LZM4_ORYBR; Auxin response factor | ||||
STRING | OB04G25990.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 1e-160 | auxin response factor 16 |