PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G25990.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 629aa    MW: 68601.6 Da    PI: 9.5003
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G25990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.8e-2398197399
                   EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                   k+lt+sd+++ g +++p+ +ae++       ++++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD +vF+  ++++++ 
  OB04G25990.1  98 KTLTQSDANNGGGFSVPRFCAETIfpelnyrDEPPVQ--LIHAKDVHGEQWTFRHIYRGTPRRHLLTTGWSPFVNKKQLLAGDCIVFM--RDEGRNI 190
                   899******************999****987656555..79999********************************************..569999* PP

                   EEEEE-S CS
            B3  93 vvkvfrk 99 
                   +v+++r+
  OB04G25990.1 191 HVGIRRA 197
                   *****97 PP
2Auxin_resp117.51.1e-38249332183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                   aa+ a+++++Fev+Y+Prast+eF+v+++ v++al+v++++GmRfkmafetedss++++ +Gt++gv+++dp+rWp+S+Wr+L+
  OB04G25990.1 249 AATLATSGQPFEVLYYPRASTPEFCVRASAVRTALSVQWCPGMRFKMAFETEDSSRISWfMGTIAGVQAADPIRWPKSPWRLLQ 332
                   68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-3488199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2691198IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.64696198IPR003340B3 DNA binding domain
SMARTSM010192.2E-1696198IPR003340B3 DNA binding domain
PfamPF023622.0E-2098197IPR003340B3 DNA binding domain
CDDcd100171.22E-1898196No hitNo description
PfamPF065071.7E-33249332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MSSVPPVGAA VYYFPQGHAE QASEAVDLSS ARVPPLVPCR VVAVRFMADE ETDEVFARIR  60
LAPLRPGDAV VDVGEAAAAG EGGRQQEEDR PQPASVPKTL TQSDANNGGG FSVPRFCAET  120
IFPELNYRDE PPVQLIHAKD VHGEQWTFRH IYRGTPRRHL LTTGWSPFVN KKQLLAGDCI  180
VFMRDEGRNI HVGIRRAKRG FCGIGGDDEG LSSLPAWDQF RGLVRGNATA GGESSPTKGK  240
VPPENVLTAA TLATSGQPFE VLYYPRASTP EFCVRASAVR TALSVQWCPG MRFKMAFETE  300
DSSRISWFMG TIAGVQAADP IRWPKSPWRL LQVTWDEPEL LQNVKRVCPW LVELVSSMPN  360
LHLPSFSSPR KKPRIPPYAE FPPDAQLFNP AFPPNLMAHG HADHHHHLHH GFPFLPFPDG  420
SAQPAGIQGA RHAQFASSFP DLYIGNLQPN LMLYSGIRLP PADQAAPRPP RIISTDLTIG  480
SQLAPDEPTT SPSSSARKID NAKPTGFLLF GQAILTEQQI KNGNSGGRAS PGATRKRSLN  540
WDAEKAPNGS EGSDSAGFSE GSPTTTKGQP PPHQHAVVEV AVFWRQQKPR IRVRAGARPV  600
QGVRRVGSRR PEPRSHGSEL VRGAVRPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-69135363388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G25990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629580.0AL662958.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019D11, complete sequence.
GenBankAL7316290.0AL731629.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0061C13, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691666.10.0PREDICTED: LOW QUALITY PROTEIN: auxin response factor 10-like
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLJ3LZM40.0J3LZM4_ORYBR; Auxin response factor
STRINGOB04G25990.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-160auxin response factor 16