PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G25060.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 636aa    MW: 66450.5 Da    PI: 6.6782
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G25060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.41.1e-10258314155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  OB04G25060.1 258 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 314
                   57*******************5444.2455535555.7799999*************98 PP
2AP250.94e-16357408155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV+++++ grW A+I  +     +k ++lg+f t+eeAa+a++ a+ k++g
  OB04G25060.1 357 SKYRGVTRHHQHGRWQARIGRVAG---NKDIYLGTFSTEEEAAEAYDVAAIKFRG 408
                   89****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.65E-16258324No hitNo description
SuperFamilySSF541712.88E-14258324IPR016177DNA-binding domain
PfamPF008473.4E-8258314IPR001471AP2/ERF domain
SMARTSM003809.7E-22259328IPR001471AP2/ERF domain
PROSITE profilePS5103217.108259322IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-11259324IPR001471AP2/ERF domain
PRINTSPR003672.4E-6260271IPR001471AP2/ERF domain
CDDcd000181.00E-23357418No hitNo description
SuperFamilySSF541711.44E-18357418IPR016177DNA-binding domain
PfamPF008476.0E-11357408IPR001471AP2/ERF domain
SMARTSM003802.9E-34358422IPR001471AP2/ERF domain
PROSITE profilePS5103219.506358416IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-19358417IPR001471AP2/ERF domain
PRINTSPR003672.4E-6398418IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MASADNWLGF SLSGQGNPQH QQNGSPSAAG AIDITGSGDF YGLPTPEGHH LGMPGEDAPY  60
GVMDAFNRGS HETQDWAMRG LDYSGGSSDL SMVVGSSGGG RRTVDDGGEA PKLENFLDGN  120
SFSEVHGQAA GGYLYSGSAV GGAGGYSNDG TIELSMIKTW LRSNQSQPQP PQXXXXXXXX  180
XLGGSCNGGG AGAAASSHGQ GLALSMSTGS VVAAAGGGGG AVAAESSSSE NKRVDSPSGA  240
VDGGVPRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEDK  300
AARAYDLAAL KYWGTTTTTN FPMSNYEKEL EEMKHMTRQE YIAHLRRNSS GFSRGASKYR  360
GVTRHHQHGR WQARIGRVAG NKDIYLGTFS TEEEAAEAYD VAAIKFRGLN AVTNFDMSRY  420
DVKSILDSST LPVGGAARRL KEAEAAAGVI VSHLGDGVGG YYYGCPTIAF GGGQQQSSVP  480
APLAVHYAYG QASGWCKPEQ DAVVAAGHCA QDLQQLHLGT GSTHNFLLQQ PASSSAVYGN  540
SGVGGGYQAP PGGNAFMMPM GAVVATADHH RQSITYGGDS DGRLAGYDGV AGVVDPYAAM  600
RSAYELSQGS SSSSVSVAKA ANGYPDNWSS PFNGMG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G25060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2877260.0AK287726.1 Oryza sativa Japonica Group cDNA, clone: J065138E17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691515.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-132BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLJ3LZD10.0J3LZD1_ORYBR; Uncharacterized protein
STRINGOB04G25060.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.11e-114AP2 family protein