PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB04G24560.1

Common Name

LOC102715846

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 935aa MW: 102059 Da PI: 6.2685

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB04G24560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.4e-29	566	617	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ OB04G24560.1 566 AEKNISLDVLRKYFSGSLKDAAKSLGVCPTTLKRICRQHGISRWPSRKINKV 617 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.245	552	637	IPR003035	RWP-RK domain
Pfam	PF02042	2.0E-26	569	617	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.18E-23	826	917	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.4E-22	831	912	No hit	No description
PROSITE profile	PS51745	25.528	833	915	IPR000270	PB1 domain
SMART	SM00666	2.5E-21	833	915	IPR000270	PB1 domain
Pfam	PF00564	1.1E-17	834	914	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 935 aa Download sequence Send to blast
MDMPTPSNHG GCNGNIGSSE VHSEDPYSTA AAMNFDSYSE MCNPSVADQL FSLLNDPAAN 60 RMFAMWSSSM GSSPRGGGMS EDMMLDTYSG LGEAAEEPSQ IMSLNPTEAE RMGNRSGELG 120 SDNGAHQWSS IVPRSVVGNS LADRMLMALS LFRESLGSGA LAQVWMPIEQ EGHLLLSTCD 180 QPFLLDQVLA GYREASRKFV FSAKEEPGLH PGLPGRVFIS GVPEWTSSVL YYHRPEYLRM 240 EHALHHDIRG SLAMPIYDAD KDSCCAVLEL VMKKEKPDFS AEMDNVCNAL QAVNLKAATD 300 SSNQKFYTEN QKVAFTEILD VLRAICHAHM LPLALTWVPT SNGIDGGYVV GKDSTNHSQS 360 GKAILHIHES ACYVNDTNMQ GFLQACANRH LEKGQGIAGR ALKSNLPFFS PDIREYSIED 420 YPLAHHARKF GLHAAVAIRL RSTYTGNDDY ILEFFLPINC RGSEEQQMLL NNLSSTMQRI 480 CKSLRTVYEA EVGKVNACTA AVERKTNENC LPTGHTESSS HGDQPITEAS FQGTSIANKP 540 GAMEPELAEQ VQSSSIGHAE KKRSTAEKNI SLDVLRKYFS GSLKDAAKSL GVCPTTLKRI 600 CRQHGISRWP SRKINKVNRS LKKIQTVINS VHGVDRSLQY DPATGSLVPV VSMPEKSAFP 660 SLDALPTPSV GKTVEDPKSE QGYSSPDGLQ RQCCQLQISD EKKSNDNKFH IGNGNSASYG 720 TNATAKSNSE GTKSPLCPTG AFSALHLKRT DYANPSGSLQ PSSECTRDQI VGRISPSIQQ 780 ADLDMLDDHA AKDKDNMHAS TSGTTDSSSG SASSHSTFKQ NIRCALKDTT SPALTVKATY 840 HGDTVRFKFL PSMGWYHLLE EIAKRFKLPT EAFQLKYRDD EDEWVILAND SDLQECVDVL 900 DSIGSRNVKL QVRDLPCNIG SSGSSTCLQL EAHSS

Sequence ? help Back to Top

Protein Sequence Length: 935 aa Download sequence Send to blast

MDMPTPSNHG GCNGNIGSSE VHSEDPYSTA AAMNFDSYSE MCNPSVADQL FSLLNDPAAN  60
RMFAMWSSSM GSSPRGGGMS EDMMLDTYSG LGEAAEEPSQ IMSLNPTEAE RMGNRSGELG  120
SDNGAHQWSS IVPRSVVGNS LADRMLMALS LFRESLGSGA LAQVWMPIEQ EGHLLLSTCD  180
QPFLLDQVLA GYREASRKFV FSAKEEPGLH PGLPGRVFIS GVPEWTSSVL YYHRPEYLRM  240
EHALHHDIRG SLAMPIYDAD KDSCCAVLEL VMKKEKPDFS AEMDNVCNAL QAVNLKAATD  300
SSNQKFYTEN QKVAFTEILD VLRAICHAHM LPLALTWVPT SNGIDGGYVV GKDSTNHSQS  360
GKAILHIHES ACYVNDTNMQ GFLQACANRH LEKGQGIAGR ALKSNLPFFS PDIREYSIED  420
YPLAHHARKF GLHAAVAIRL RSTYTGNDDY ILEFFLPINC RGSEEQQMLL NNLSSTMQRI  480
CKSLRTVYEA EVGKVNACTA AVERKTNENC LPTGHTESSS HGDQPITEAS FQGTSIANKP  540
GAMEPELAEQ VQSSSIGHAE KKRSTAEKNI SLDVLRKYFS GSLKDAAKSL GVCPTTLKRI  600
CRQHGISRWP SRKINKVNRS LKKIQTVINS VHGVDRSLQY DPATGSLVPV VSMPEKSAFP  660
SLDALPTPSV GKTVEDPKSE QGYSSPDGLQ RQCCQLQISD EKKSNDNKFH IGNGNSASYG  720
TNATAKSNSE GTKSPLCPTG AFSALHLKRT DYANPSGSLQ PSSECTRDQI VGRISPSIQQ  780
ADLDMLDDHA AKDKDNMHAS TSGTTDSSSG SASSHSTFKQ NIRCALKDTT SPALTVKATY  840
HGDTVRFKFL PSMGWYHLLE EIAKRFKLPT EAFQLKYRDD EDEWVILAND SDLQECVDVL  900
DSIGSRNVKL QVRDLPCNIG SSGSSTCLQL EAHSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB04G24560.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK103154	0.0	AK103154.1 Oryza sativa Japonica Group cDNA clone:J033120P08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652467.1	0.0	PREDICTED: protein NLP2-like isoform X1
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	J3LZ81	0.0	J3LZ81_ORYBR; Uncharacterized protein
STRING	OB04G24560.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Entrez Gene	102715846

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]