PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G24170.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 293aa    MW: 31639.9 Da    PI: 8.6569
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G24170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12219264655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +++Er RR ri +++ +L+ l+P+     +k  s +++L +Ave+Ik Lq
  OB04G24170.1 219 SIAERERRTRISEKLRKLQALVPNM----DKQTSTSDMLDLAVEHIKGLQ 264
                   689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.113213263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15216279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-12217268No hitNo description
Gene3DG3DSA:4.10.280.107.3E-14218277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-9219264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MRQHQHYGGG SGAEISLGHG HHFHQFGVEA KDGGGGGGAD QSAFLARHNS SPPGFFSSPV  60
MDNGFSSSGR AGSLGEVRHA AMSSSSNNKK MKAPLNFASR QGSLSQISED GIPDLTDNMH  120
GGAHGRSEEN VSTDHVVRSF SGGFSIGSWE DSNSIVFSTS TGKSGVHGND DIIATLSNYE  180
SQLVAPREMA GVEKYLQMQH DQVPFRVRAK RGCATHPRSI AERERRTRIS EKLRKLQALV  240
PNMDKQTSTS DMLDLAVEHI KGLQSQLKTL KEDKEKCTCS CNRQASRNRS SAD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G24170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680390.0AK068039.1 Oryza sativa Japonica Group cDNA clone:J013131B20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653553.10.0PREDICTED: transcription factor bHLH128-like, partial
TrEMBLJ3LZ420.0J3LZ42_ORYBR; Uncharacterized protein
STRINGOB04G24170.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141882026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-46bHLH family protein