PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G23430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27375.1 Da PI: 5.8204 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55.9 | 1.5e-17 | 4 | 85 | 56 | 128 |
NAM 56 kewyfFskrdkkyatgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++ +fF++ +++y +g+rk+r+ ++ +W++tgk+ke+++ +g ++g kk+Lv+ykg ++ k e+++Wvmh+y+l OB04G23430.1 4 SSSHFFHRISNAYGSGQRKRRKishhkhsasDENIRWHKTGKSKEIYH-NGVKKGWKKILVLYKGsKRDKIEQANWVMHQYNL 85 4679*****************867777766544778************.999***********995667789*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.531 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.94E-21 | 2 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-6 | 7 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDGSSSHFFH RISNAYGSGQ RKRRKISHHK HSASDENIRW HKTGKSKEIY HNGVKKGWKK 60 ILVLYKGSKR DKIEQANWVM HQYNLGVEED EKNGEFVVCK VFFQSSSKQT CTPEMDSVTE 120 TSDALTVRSD PITPITNPPQ PLYPVNSPCD TEQNVTISHN QEGESSISTL RAKVEPENPG 180 GCSGTGTSTA EDFDESPPQR YGLRGDSVPP LEEEPFPELD LFNLADFCKF SSQDSFSWAD 240 GDQT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G23430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653523.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like | ||||
TrEMBL | J3LYW8 | 0.0 | J3LYW8_ORYBR; Uncharacterized protein | ||||
STRING | OB04G23430.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 3e-35 | NAC family protein |