PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G23300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 212aa MW: 23095.1 Da PI: 9.6907 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 33 | 1.7e-10 | 50 | 154 | 32 | 128 |
NAM 32 evikevdiykvePwdLp.k.......kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kgelvglkktLvfykgr.apk 115 ev vd+y+++P L +e + +fFs + + +++r + g+W g dk+ +ge+v ++ ++f++ r + + OB04G23300.1 50 EVTVGVDVYSAHPAALApLprcfwrgD--PcGEASRWFFSAGSPED---GERRRDALGGFWTRYGCDKAYAGGegsGGEAVAFRRRFAFFDRRgDGD 141 467889**********53355555431..13455667888876654...456677788***********99877778888**********5431334 PP NAM 116 gektdWvmheyrl 128 t+W m+eyrl OB04G23300.1 142 LAPTEWRMKEYRL 154 469********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 18.768 | 12 | 182 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.83E-15 | 25 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-6 | 25 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MAKQSPRASA EHPDGEAFRR LTGRMVVTDY LVPVALRGAL PEGVVSLPGE VTVGVDVYSA 60 HPAALAPLPR CFWRGDPCGE ASRWFFSAGS PEDGERRRDA LGGFWTRYGC DKAYAGGEGS 120 GGEAVAFRRR FAFFDRRGDG DLAPTEWRMK EYRLNKRAAT SRGANQLDPE AKEYAVCKIY 180 NTGRIPGPPP LCLSVRRCRL RRGRGGAAEG SG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G23300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3LYV5 | 1e-150 | J3LYV5_ORYBR; Uncharacterized protein | ||||
STRING | OB04G23300.1 | 1e-150 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12891 | 22 | 31 |