PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G23030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 419aa MW: 43793.5 Da PI: 8.1829 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0016 | 57 | 78 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cgk F + + H+r+H OB04G23030.1 57 TCPECGKAFLSDKAMYGHLRSH 78 8*********999999999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 11.489 | 56 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 56 | 78 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 5.2E-8 | 57 | 78 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 58 | 78 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.5E-4 | 58 | 80 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.2E-8 | 225 | 252 | No hit | No description |
Pfam | PF13912 | 4.8E-8 | 230 | 254 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.22 | 230 | 252 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.515 | 230 | 257 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 232 | 252 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.9E-7 | 308 | 331 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 309 | 336 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.7 | 309 | 331 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 311 | 331 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MTAAAAAKVD ATDDEEPPAP AELAPKAASQ KKVVEVQGAG LGDGAVDAAP PVREDLTCPE 60 CGKAFLSDKA MYGHLRSHPQ RRSRYKGAAA AADEGFMGGV TRTRKVAQKE AALGDHHHPG 120 RSPGFVVQEE PEKAALKEHV AAVTAEPHMP EPRTPVKLGP IAEAPILGDK NRPADTPLSS 180 SRRTKYPVKP GSHGVEQQSP PAPAPPAADV GPPPPPVVRR IPSPASDKKF GCPVCPRTFS 240 SYQALGGHTT MHKRELRRSA QQRQHDAHSI LAQQLHGVVD APVVAASGRG PVEEGLVSPP 300 AAAPPKETFQ CAKCYMIFPT GQALGGHKRK HFLEKEQLRP SITPSPQTTA TTEPAPLVAH 360 ANPASPIASA ASPAPMAKPV PSGGSTPETP IGAAAAEQPG INIFDLNELP KDHEGENQP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G23030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653512.1 | 0.0 | PREDICTED: zinc finger protein 628-like | ||||
TrEMBL | J3LYS8 | 0.0 | J3LYS8_ORYBR; Uncharacterized protein | ||||
STRING | OB04G23030.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18193 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 6e-14 | C2H2 family protein |