PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G22290.1
Common NameLOC102709553
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 347aa    MW: 37301.2 Da    PI: 7.0957
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G22290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.2e-52111361128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdeel+++yL+kkv++ ++ +  ++ e+d++k+ePwdLp+ ++ +ekewyfF+ +d+ky+tg r+nrat++gyWkatgkdk++++ ++
  OB04G22290.1  11 LPPGFRFHPTDEELITHYLAKKVADGRFAA-LAVGEADLNKCEPWDLPSLARIGEKEWYFFCLKDRKYPTGLRTNRATEAGYWKATGKDKDIFR-GK 105
                   79*************************999.67***************8888899***************************************.99 PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +lvg+kktLvfy+grapkgek+ Wvmhe rl
  OB04G22290.1 106 ALVGMKKTLVFYTGRAPKGEKSGWVMHEPRL 136
                   ***************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-617168IPR003441NAC domain
PROSITE profilePS5100556.50611168IPR003441NAC domain
PfamPF023651.7E-2712133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEQQGQADMD LPPGFRFHPT DEELITHYLA KKVADGRFAA LAVGEADLNK CEPWDLPSLA  60
RIGEKEWYFF CLKDRKYPTG LRTNRATEAG YWKATGKDKD IFRGKALVGM KKTLVFYTGR  120
APKGEKSGWV MHEPRLHGKL HLAAGALGLP GKPASSKNEW VLCRVFKKSL VEVGAAGAKK  180
AAAMEMARGD STSSVADEIA MSVLPPLMDM SGAGGAVDPA TTAHVTCFSN ALEGQFFNPT  240
AVHGHGGEDH HHHHGLAAAP SSSFMANFTQ YGQLHHGVSL VQLLESCNGY GGLVDMASAG  300
RQLPAACGGE RERLSASQDT GLTSDMNPEI SSSSGQKFDH EAALWSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-5121696169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G22290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281810.0AB028181.1 Oryza sativa mRNA for OsNAC2 protein, complete cds.
GenBankAK0617450.0AK061745.1 Oryza sativa Japonica Group cDNA clone:001-038-F10, full insert sequence.
GenBankAK1046260.0AK104626.1 Oryza sativa Japonica Group cDNA clone:006-310-B03, full insert sequence.
GenBankCT8301070.0CT830107.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA218A09, full insert sequence.
GenBankDQ5206410.0DQ520641.1 Oryza sativa (japonica cultivar-group) NAC domain protein (TIL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652366.10.0PREDICTED: NAC domain-containing protein 92-like
RefseqXP_015691663.10.0PREDICTED: NAC domain-containing protein 92-like
TrEMBLJ3LYK40.0J3LYK4_ORYBR; Uncharacterized protein
STRINGOB04G22290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.25e-86NAC domain containing protein 80