PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G21050.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 309aa    MW: 35996.5 Da    PI: 8.4669
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G21050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52101391129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPtdeel+ +yLkkkv  +k++l evi+evd++k+ePw+L++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + +
  OB04G21050.1  10 VPPGFRFHPTDEELLLYYLKKKVGFEKFDL-EVIREVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT 105
                   69****************************.99**************963433332566*************************************9 PP

           NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                    + +++g++ktLvfy+grap+g+ktdW+mheyrle
  OB04G21050.1 106 -SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139
                   .8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-545144IPR003441NAC domain
PROSITE profilePS5100552.52710157IPR003441NAC domain
PfamPF023651.3E-2711138IPR003441NAC domain
PfamPF085831.1E-12158210IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KVGFEKFDLE VIREVDLNKI EPWELQERCR  60
IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR  120
GRAPHGQKTD WIMHEYRLED ADDAQGGTSV YVHTYLEMHP PLTLHRHPMC AEIIEAFQKC  180
HVDHPVKKFF GECTDLKIKL DQCFRQEFTS YSLMWLSLMF DQFFSTVGSP IADMDCLFDS  240
SRGASERAKM EHVPLLSPYE MGRYTLSHRL KLVLFGGCKE QTIELPTIVL FTLFLQNCAG  300
TINKIKIIW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-471015020157NAC domain-containing protein 19
3swm_B1e-471015020157NAC domain-containing protein 19
3swm_C1e-471015020157NAC domain-containing protein 19
3swm_D1e-471015020157NAC domain-containing protein 19
3swp_A1e-471015020157NAC domain-containing protein 19
3swp_B1e-471015020157NAC domain-containing protein 19
3swp_C1e-471015020157NAC domain-containing protein 19
3swp_D1e-471015020157NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G21050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715420.0EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LY800.0J3LY80_ORYBR; Uncharacterized protein
STRINGOB04G21050.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.15e-86NAC domain containing protein 70