PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G19930.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 402aa    MW: 43745.3 Da    PI: 6.4503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G19930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14129212455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...................................TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkas................................kapskKlsKaeiLekAveYIksLq 55 
                   +h   Er RR+++N++f+ L  l+P++s                                  +++K +Ka+i+e +++YIk+Lq
  OB04G19930.1 129 MHAWTERGRRKEMNNKFDLLHALVPNLSekvsllatvgtwnlhldlyldpscgvsvierfLLTQTKADKATIVEATINYIKNLQ 212
                   67889*********************999******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.671125211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-13128155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-9128215No hitNo description
PfamPF000101.4E-11129212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-14130155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-6131217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-13190231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-14191231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSQEGTDLSQ ETHDHTFIMV SKTPLGLTKK DHSKSNKFDE NNTSSNPTIS VVSGDDIKGR  60
RQDLFITNKK GEGDGGGGIT IGVSEPKCKS SSDEGDCELM GVVTGTSEGC IGGNGNNEVK  120
SSADVNHMMH AWTERGRRKE MNNKFDLLHA LVPNLSEKVS LLATVGTWNL HLDLYLDPSC  180
GVSVIERFLL TQTKADKATI VEATINYIKN LQNEVYKLET LKMQQRKRMS KTRTLRRTPR  240
RRPRPPAAAN ADGEGSATPV PAPPVPEEEE AVAPTRETAL ADMVHVWEEE EVAGGGARHG  300
WRGSPAPLQT WTGSNMTVSL AGDDAFITLS LPRGLSVVTG AVWILERHHI DVRTATLSTP  360
DQDSSLLSLH CHLSPACSSS QNLTPVDKYK LAVSELMLWI AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226242KRMSKTRTLRRTPRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G19930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653398.21e-116PREDICTED: transcription factor bHLH95-like
TrEMBLJ3LXW80.0J3LXW8_ORYBR; Uncharacterized protein
STRINGOB04G19930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-08bHLH family protein