PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G19620.1
Common NameLOC102708145
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 779aa    MW: 89139 Da    PI: 7.2947
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G19620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1767.5e-2413101190
          FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                   +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+   ++  + + +rtgC+a+l+++++k  ++ ev+ ++  HnH+l+
  OB04G19620.1  13 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NQMVPMPDSRTGCNAHLVIRRKKpGARLEVYAFQPRHNHPLF 101
                   6******************************************9988..8999*******************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.2E-2013101IPR004330FAR1 DNA binding domain
PfamPF105513.8E-17236313IPR018289MULE transposase domain
PROSITE profilePS5096610.596499535IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-6509533IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5510537IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MGMEFESEHE AYEFYRYYGW KVGFNVRKEY ANKSKKTGEI TSRKFACSRE GYRANVKRGN  60
QMVPMPDSRT GCNAHLVIRR KKPGARLEVY AFQPRHNHPL FSTSCMPNPL QPNIVHWTTL  120
PDAVTPPDLL MNGGELGGQS SSEENGNASA REARRQPLRT RRQWEMKYGE AGALLNYFQE  180
QSLANPSFYH AVQLDVEDKV ANVFWADQRM ITDYSQFGDV IAFDVVSRNS ISLRHFCSFV  240
GCNNFGEPIV FGLALMYDET AESFHWLFET FLHTMSGQAP KTCFSHQDMV IANTVSLVMP  300
ETIHVICAWH LKHAAARNIN QLKGDSDFMK EFKACVNLYE EETEFLTSWD TMINKHNLCD  360
NVWLQKVFEE KEKWARPYMK GVFSAGMKGT RLNDCLQSDV RDHLRPEVNI LILLGHVEAV  420
INDRRHKELE VEYSSRLKLP YFKIKAPILI QAFEAYTNMI FPLFQEEYEE FQSAYIVNRD  480
ESGPCREYVV SVVEKDKQYT VYGNPTEQTV SCSCKKFERN GYLCSHALKI LDAMDIKYLP  540
DRYIMKRWTK YARCLTFGDS QGQAIQADKL LESSSRYQHI CPKYVRLVAR ASECEESYRV  600
LDQCWVDLSN KVEEILQKQT SVDATLSQTD VQSLKISLPS ITNDTEAENI MDKSSGTTAK  660
ESKKKGQKNK VQSRNCIEKG LRKKQKVHSE QPAVQYTLLD GSQSGNMFQA FEGPPNMSPL  720
GSQTPTYKTY RGIDLSSPMG PISYDEMPSG LDPTFTPHLG FATYHTSQVS SSSQHNQVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G19620.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0729980.0AK072998.1 Oryza sativa Japonica Group cDNA clone:J023143C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652283.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X1
TrEMBLJ3LXT70.0J3LXT7_ORYBR; Uncharacterized protein
STRINGOB04G19620.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-83FAR1-related sequence 5