PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G18780.1 | ||||||||
Common Name | LOC102721827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | S1Fa-like | ||||||||
Protein Properties | Length: 80aa MW: 8875.56 Da PI: 10.5244 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 133.4 | 5.8e-42 | 11 | 80 | 2 | 70 |
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v ++e+ kGlnPG ivllvv++lll+f+vgny+ly+yaqk+lPPrkkkPvskkklkreklkqGv++PGe OB04G18780.1 11 NVIIEEVnKGLNPGTIVLLVVATLLLLFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREKLKQGVSAPGE 80 55667778*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD019013 | 9.0E-10 | 12 | 80 | No hit | No description |
Pfam | PF04689 | 9.4E-40 | 16 | 80 | IPR006779 | DNA binding protein S1FA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MADQFTDSAN NVIIEEVNKG LNPGTIVLLV VATLLLLFFV GNYALYMYAQ KTLPPRKKKP 60 VSKKKLKREK LKQGVSAPGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G18780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072291 | 3e-95 | AK072291.1 Oryza sativa Japonica Group cDNA clone:J023018N16, full insert sequence. | |||
GenBank | AK289133 | 3e-95 | AK289133.1 Oryza sativa Japonica Group cDNA, clone: J090099A10, full insert sequence. | |||
GenBank | AP014960 | 3e-95 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | BT129157 | 3e-95 | BT129157.1 Oryza sativa clone RRlibA00156 mRNA sequence. | |||
GenBank | BT130526 | 3e-95 | BT130526.1 Oryza sativa clone RRlibC01181 mRNA sequence. | |||
GenBank | CP012612 | 3e-95 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652250.1 | 2e-51 | PREDICTED: DNA-binding protein S1FA2 | ||||
Swissprot | Q7XLX6 | 2e-32 | S1FA2_ORYSJ; DNA-binding protein S1FA2 | ||||
TrEMBL | J3LXK3 | 5e-50 | J3LXK3_ORYBR; Uncharacterized protein | ||||
STRING | OB04G18780.1 | 8e-51 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Link Out ? help Back to Top | |
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Entrez Gene | 102721827 |
Publications ? help Back to Top | |||
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