PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G18770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family S1Fa-like
Protein Properties Length: 184aa    MW: 20277.8 Da    PI: 11.1678
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G18770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.53.1e-43115184270
          S1FA   2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 
                   +v+++e+ kGlnPG+ivllvv+++ll+f+vgny+lyvyaqk+lPPrkkkPvskkk+kreklkqGv++PGe
  OB04G18770.1 115 NVVIEEVsKGLNPGMIVLLVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE 184
                   56777877*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190139.0E-10116184No hitNo description
PfamPF046894.0E-40120184IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MFILSFFTRT VSLTICWVGP PAHLPKIHPS HHLHHHFRSP SLSNRSCVLP SLISPKFQNF  60
PSPAPLNPIR SSNPFSLVPD RAAASSGAAQ SRRKSLVREV LVAAMAEQFA DSANNVVIEE  120
VSKGLNPGMI VLLVVATFLL LFFVGNYALY VYAQKTLPPR KKKPVSKKKM KREKLKQGVS  180
APGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G18770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1212052e-95AK121205.1 Oryza sativa Japonica Group cDNA clone:J023087P18, full insert sequence.
GenBankBT1310312e-95BT131031.1 Oryza sativa clone RRlibC00345 mRNA sequence.
GenBankCT8339932e-95CT833993.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA333Z77, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LXK21e-130J3LXK2_ORYBR; Uncharacterized protein
STRINGOB04G18770.11e-131(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.17e-06S1FA-like DNA-binding protein