PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G18290.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 285aa    MW: 29798.2 Da    PI: 4.8525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G18290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1855106156
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  OB04G18290.1  55 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 106
                   5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.21E-3055114No hitNo description
PROSITE profilePS5103221.56256113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2856113IPR001471AP2/ERF domain
PfamPF008471.0E-1056105IPR001471AP2/ERF domain
SMARTSM003803.1E-3256119IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-2156113IPR016177DNA-binding domain
PRINTSPR003671.6E-85768IPR001471AP2/ERF domain
PRINTSPR003671.6E-87995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTMKETTASV NMSLIVFIAK ATMPFIASRA ELNSIVIYLQ INILAHHPRV EGNQTRYLGV  60
RRRPWGRYAA EIRDPATKER HWLGTFDTAE EAAVAYDRAA RSLRGARART NFAYPDLPPG  120
SSITPYLSPD LTDGSDQLPQ PFYANPSAAL PIPAAGVDVG SGYMMYGGAN GADMSALMDD  180
IAMPDDLPPM AGGGFRSGGA SGGGGGGMLD VSMYGVGNGG ANANGGGWCD ASDFTSYSSS  240
PAPGSHGMYF EEGYVHSPLF SPMPAGAAAG ADGFQLGGSS SSYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1857112662ATERF1
3gcc_A9e-1857112662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G18290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316421e-128AL731642.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23, complete sequence.
GenBankAP0149601e-128AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015691972.11e-168PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLJ3LXF40.0J3LXF4_ORYBR; Uncharacterized protein
STRINGOB04G18290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.13e-24ERF family protein