PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G17680.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 1012aa    MW: 112935 Da    PI: 6.332
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G17680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.38.1e-55111272117
          CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                   +ke k+rwlk++e++ iL+n+e++ +t e++++p+sgsl++ynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np fqrr
  OB04G17680.1  11 HKEaKSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFIYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCFQRR 107
                   67779******************************************************************************************** PP

          CG-1  98 cywlLeeelekivlvhylev 117
                   c+w+Le ++e+ivlv+y+ev
  OB04G17680.1 108 CFWMLEPAYEHIVLVQYREV 127
                   ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.5957133IPR005559CG-1 DNA-binding domain
SMARTSM010764.9E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038596.5E-4713126IPR005559CG-1 DNA-binding domain
PfamPF018332.7E-7460541IPR002909IPT domain
SuperFamilySSF812969.45E-16460542IPR014756Immunoglobulin E-set
Gene3DG3DSA:2.60.40.101.9E-6460546IPR013783Immunoglobulin-like fold
Gene3DG3DSA:1.25.40.209.2E-16655751IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-15656752IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.584657749IPR020683Ankyrin repeat-containing domain
CDDcd002049.68E-10662749No hitNo description
PfamPF127961.2E-6673750IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.751690722IPR002110Ankyrin repeat
SMARTSM002486.8E-4690719IPR002110Ankyrin repeat
SMARTSM002481500729758IPR002110Ankyrin repeat
SMARTSM0001527810832IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529811840IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.712869898IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525402.92E-6869916IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM0001519870890IPR000048IQ motif, EF-hand binding site
PfamPF006120.019871889IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6891913IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64892920IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5893913IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MSLSFDINVL HKEAKSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF IYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPAESLSVL SHPNAAYGNQ YLGSTSGVSD GSESRQSYSN  180
LSSVTEVSSY SANNEYNNDT GILQSIPELG QSIAVGGPAC GQSSLEQNIE VCRVDNGNPT  240
NKSGLNRALK QIVEQLSLGD DEDDDYIYVN QIQPFDFITN IEAPDRQRGH ASTNVSGDDQ  300
AKQIRAEEMQ NGLGRGISSS WEDVLQSSSG FPAPSIYQQS GAHYPQNSEY QPLGSLYNSD  360
MQQISAAKRF LLGPEDIDSP SYNYVTREEV NNGDYTLSAH ENSLQSSLNP DWKRTAPLTL  420
QSTSHGSEIS GLLFDHHQFE SLSSGENTRL TLGQKQRFSI REVSPDWAYC YEITKVIITG  480
DFLFDPSSSC WAVMFGDSEV PVEIVQPGVL RCHTPLHSSG KLTICVTSGN REICSEVKDF  540
EFRTKSTSSS SLDIPPSSRS LKSIEELLLL AKFVRMLLCE NGSHVNSNSD PQSGQCPKLK  600
MNDEHWQRLI DELKGGCENP LNVTDWIMEQ LLKSKLQQWL SVRLQGYDGT ACSLSKHEQG  660
IIHLISALGY EWALSSVLSA GVGVNFRDTN GWTALHWAAC FGREKMVAAL LAAGGSAPAV  720
TDPTAQDPVG KTAAFLASER GHMGLAAYLS EVSLTTYLAS LTIEETDTSK GSAVVEAERA  780
VESISQRNPQ LHGGTEDELS LKDSLAAVRN AAQAAARIQN AFRAFSFRKR QQKTARLKDE  840
YGMTQEEIDE LAAASRSYYQ SLAPNGQFYD KAAVSIQKKY KGWKGRRHFL NMRRNAVKIQ  900
AHVRGHQVRK KYKTFVSTVS VLEKVILRWR RKGHGLRGFR AEQTAMTEAG EEDGDDDDDD  960
FNDDEAVKMF RRQKVDESVK EAMSRVLSMV DSPEARMQYR RMLEEFRQAT AE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G17680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652212.10.0PREDICTED: calmodulin-binding transcription activator 4
TrEMBLJ3LX930.0J3LX93_ORYBR; Uncharacterized protein
STRINGOB04G17680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains