PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G17230.1
Common NameLOC102707302
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 655aa    MW: 73415.7 Da    PI: 8.6288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G17230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-07470511240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W +eE e l +a++++++g   +W+ +++ +g+gR+ +++
     OB04G17230.1 470 KPWGKEEIEMLRKAIQKYPKGtsrRWEVVSEFLGTGRSVEEI 511
                      69***********************************99876 PP
2Myb_DNA-binding21.55.4e-07598640343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      +W++   + lv+a k ++++   +W+++a+ ++ g+t  qck +
     OB04G17230.1 598 AWSEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 640
                      7********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465652.88E-2070174IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.5E-2092186IPR001623DnaJ domain
SMARTSM002716.3E-1595170IPR001623DnaJ domain
PfamPF002267.4E-1896175IPR001623DnaJ domain
CDDcd062574.44E-1396167IPR001623DnaJ domain
PROSITE profilePS5007618.16696178IPR001623DnaJ domain
PRINTSPR006257.2E-9101119IPR001623DnaJ domain
PRINTSPR006257.2E-9119134IPR001623DnaJ domain
PRINTSPR006257.2E-9150170IPR001623DnaJ domain
PROSITE patternPS006360155174IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.214464519IPR017877Myb-like domain
SuperFamilySSF466891.33E-7465512IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-5466511IPR009057Homeodomain-like
SMARTSM007171.5E-6468521IPR001005SANT/Myb domain
PfamPF002493.6E-6470511IPR001005SANT/Myb domain
CDDcd001674.33E-5471511No hitNo description
SMARTSM007172.0E-6595647IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-8596644IPR009057Homeodomain-like
PfamPF002491.4E-5598640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-4598640IPR009057Homeodomain-like
CDDcd001674.06E-5598640No hitNo description
PROSITE profilePS500906.063599640IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MDIRTSCLLI TYSPEIIDGV PLHVSSNCLP IKACKYEPAG HSFHAAALKL LGLGEQEDAE  60
ADDRSVSSDD KSQDFSAASD TFSSKGKKKS GSQQQDHYAL LGLAHLRFLA TEDQIRKSYR  120
DMALKHHPDK QASLILAEAT EEAKQAKKDE IESHFKAIQE AYEVLIDPTK RRIFDSTDEF  180
DDDVPTDCAP QDFYKVFGPA FMRNGRWSVN QTIPSLGDDA TPIEEVDKFY NFWYNFKSWR  240
EFPHADEYDL EQAESREHKR WMERQNVKLQ EKAKKVEYAR VRTLVDNAYK KDPRIQRRKE  300
EEKAEKQRRK EAKYLAKKMQ EEEAARAAEE ERKRKEEEAK RAAEAALNQK KLKEKEKKLL  360
RKEKTRLRNL VAPVVAESHF SLSEDDVETA CSSLDMEKLK KLCDSMENID VSEKARLLRG  420
ALSKECSSGT SNDGKKIQAN GVDGSTAKPA SSGEKVAQGN TLSSYEKKEK PWGKEEIEML  480
RKAIQKYPKG TSRRWEVVSE FLGTGRSVEE ILKATKTVLL QKPDSTKAFD SFLEKRKPAP  540
SIASPLSVRT ETAGLPTEGS GNASSKAPAQ PASSKTADEQ AGAAPVSNGT PSVTDPEAWS  600
EAQVLALVQA LKAFPKDASQ RWERVAAAVP GKTVVQCKKK VAEMQKNFRS KKGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A4e-1919229620124Zuotin
5dje_B4e-1919229620124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331352RKRKEEEAKRAAEAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G17230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLJ3LX480.0J3LX48_ORYBR; Uncharacterized protein
STRINGOB04G17230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain