PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G16480.1 | ||||||||
Common Name | LOC102704048 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB | ||||||||
Protein Properties | Length: 974aa MW: 109925 Da PI: 4.8367 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.8e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l OB04G16480.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l OB04G16480.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.5E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 7.41E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.58E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 6.4E-59 | 406 | 658 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 974 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKRPP PGFYDTVGED RPLEHVQFPT 240 TIEELEGKRR VDIEAQLRKQ DIARNKILQR QDAPAAIMQA NRLNDPEAVT KRSKLMLPPP 300 QISDHELEEI AKMGNASDPS LVEELGEGST ATRALLANYS QTPRLGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPELH PSDFSGVTPR KKEMQTPNPM ATPLASPGPG 420 VTPRIGMTPS RDSSSFGLTP KSTPFRDELR INEEVDMQDS AKLELRRQAE LRKSLRSGFA 480 SIPQPKNEYQ IVMPPITEEE KEEAEEKIDE DMSDKLARER AEEQARQEAL LRKRSKVLQR 540 SLPRPPAASI EILRQALIKG GESRSRSTFV PPTSLEQADE LINEELLRLL EHDNAKYPLD 600 EKAQKDKKKG SKRQVNGVPS VPEIEDFDED ELKEASSMLE EEVQYLRVAM GHESESLEDF 660 VKAHDACQDD LMFFPNNNSY GLASVAGNAD KIAALQYEFE IVKKKMDDEA KKASRLEQKI 720 KLLTQGYQVR AGKLWSQVQD TFKQMDTSAT ELECFQELQK QEQMAASYRI RNLTEEVNKQ 780 KALERTLQSR YGDLLTGYQR IQEQIEEHKR QLMIQEEMEA QKRAQEEEME AQRRAQAEQE 840 KERENHSAEE EAEQMDKSAD EEAAGSNQVD EDQMDVDNST ADGEFVGPIP PGPDSEGDNN 900 AVAVEQNSSS HNGDNATTDD AACSMIDDAS KLGGQDHTDS KSELPTVGAK VDEGNAAASS 960 DQDASSEANA TVPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 795 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G16480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102248 | 0.0 | AK102248.1 Oryza sativa Japonica Group cDNA clone:J033088F07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006652188.1 | 0.0 | PREDICTED: cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | J3LWX3 | 0.0 | J3LWX3_ORYBR; Uncharacterized protein | ||||
STRING | OB04G16480.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 102704048 |
Publications ? help Back to Top | |||
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