PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G13670.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 324aa    MW: 35492 Da    PI: 8.3135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G13670.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
     OB04G13670.1 14 KGPWSPEEDAKLKEFIEKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding34.16.5e-1169111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+ Ed  +   ++  G++ W+ Ia+ ++ gRt++++k++w++
     OB04G13670.1  69 GEFTENEDRVICSMFASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.884966IPR017930Myb domain
SuperFamilySSF466892.68E-2711109IPR009057Homeodomain-like
SMARTSM007179.4E-131364IPR001005SANT/Myb domain
PfamPF002499.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-241569IPR009057Homeodomain-like
CDDcd001674.95E-101662No hitNo description
PROSITE profilePS5129415.82167117IPR017930Myb domain
SMARTSM007176.5E-1067115IPR001005SANT/Myb domain
PfamPF002491.5E-969111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKN NVKKGPWSPE EDAKLKEFIE KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FTENEDRVIC SMFASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLIGA  120
GAAPPRVQRH QNHHHRPLSM LPHTTPSSFY SAGGFSSAAG GAGFHQDPAM PTLTLPTTAQ  180
EYLVSSPPGL PMASATALLH HLHGAAATAH HHQLQVKEES SNMIVFGSDQ QSCSSSDGMP  240
HGGHHGRELM IFDGYSYGGY GSCIDQVVDN KLFQQQDHQA AQPPLEYNFD EIKQLLMNTT  300
TNAAQDHGGS IEGMIASQGK VTMM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G13670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0962051e-140FP096205.1 Phyllostachys edulis cDNA clone: bphylf043l07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824972.11e-130transcription factor RAX2-like
TrEMBLJ3LW420.0J3LW42_ORYBR; Uncharacterized protein
STRINGOB04G13670.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-72MYB family protein