PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB04G12040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 86aa MW: 9802.2 Da PI: 11.7933 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.1 | 3.5e-06 | 30 | 52 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C + F++ L H+++H OB04G12040.1 30 YTCGYCRREFRSAQALGGHMNVH 52 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.89E-7 | 28 | 57 | No hit | No description |
PROSITE profile | PS50157 | 11.51 | 30 | 57 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.9E-4 | 30 | 56 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.4E-6 | 30 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 52 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
EQQQQRPWSC SFGMAAGLIS WPPQRSSSSY TCGYCRREFR SAQALGGHMN VHRRERARLR 60 QCPKRGPRQC PTPTPPPHPP PPPRLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|Ref.4}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB04G12040.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL663013 | 5e-51 | AL663013.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0089K06, complete sequence. | |||
GenBank | AP014960 | 5e-51 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 5e-51 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880331.1 | 5e-21 | transcriptional regulator SUPERMAN | ||||
Swissprot | Q9SLB8 | 1e-18 | ZFP11_ARATH; Zinc finger protein 11 | ||||
TrEMBL | J3LVM9 | 7e-54 | J3LVM9_ORYBR; Uncharacterized protein | ||||
STRING | OB04G12040.1 | 1e-54 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4667 | 30 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42410.1 | 2e-21 | zinc finger protein 11 |