PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G10630.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 502aa    MW: 57213.4 Da    PI: 11.8403
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G10630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-05261283223
                   EETTTTEEESSHHHHHHHHHH.T CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    C+ Cg++F+  ++L++H+   H
  OB04G10630.1 261 ACSQCGEVFTKAESLEHHQAIrH 283
                   6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280260283IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619260288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MALSTLLLPS SSTSKTATVT DTSDRRRHHH HQNHTKRKKK PPPPPPLSPM PRTPPPGSGA  60
GHRAMATVTA SKXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXPPRP PADRDTTPLT  180
RSSRRAHRAA SSSSGGGHHP ALRGLSGCYE CRAINVEPMS RSPNKSPINY LSTKPIINHI  240
INMRLILVLI RRYPRPRELC ACSQCGEVFT KAESLEHHQA IRHAVSELGP EDSGRNIVEI  300
IFKSSWQKRD RPICHIDRIL KVHNAPRTVA RFEAYRDAVR TRCRAXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
GRRRGGEQRV RQPGGAVRGE PEGHTAVLRR HLPRRRVTDR SNNPTLKMLI ASIIVCINRP  480
TISTSYVCKS IVDCSLSRST RL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12439RRRHHHHQNHTKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G10630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0856072e-85BT085607.2 Zea mays full-length cDNA clone ZM_BFc0038L11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LV881e-116J3LV88_ORYBR; Uncharacterized protein
STRINGOB04G10630.11e-117(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124312731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.19e-42C2H2-like zinc finger protein