PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB04G10320.1
Common NameLOC102710293
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 834aa    MW: 91174.8 Da    PI: 5.0797
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB04G10320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-084573127
                  --S---SGGGGTS..--TTTTT-SS-SSS CS
       zf-CCCH  1 yktelCrffartG..tCkyGdrCkFaHgp 27
                  +kt+lC+ff+r     C++G++C++aH++
  OB04G10320.1 45 WKTSLCSFFRRPAadGCSHGESCRYAHSE 73
                  8**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.1E-124179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.91E-64278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8454474IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-64573IPR000571Zinc finger, CCCH-type
CDDcd005905.24E-5116181No hitNo description
Gene3DG3DSA:3.30.70.3304.2E-6119186IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549286.58E-6119188IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5168742.813234834IPR010280(Uracil-5)-methyltransferase family
SuperFamilySSF533356.67E-49236262IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.67E-49294397IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.67E-49453580IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1503.7E-62476580IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138472.6E-9525582IPR025714Methyltransferase domain
CDDcd024401.36E-7526580No hitNo description
Gene3DG3DSA:3.40.50.1503.7E-62716774IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.67E-49722834IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF059581.1E-6727770IPR010280(Uracil-5)-methyltransferase family
PROSITE patternPS012300730762IPR030390RNA methyltransferase TrmA, active site
Gene3DG3DSA:3.40.50.1503.7E-62809834IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001510Biological ProcessRNA methylation
GO:0006396Biological ProcessRNA processing
GO:0000166Molecular Functionnucleotide binding
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MEMEMEDTKA APPPPSDLDV TGDKRKRDDD ASSSVAGKDA QHPMWKTSLC SFFRRPAADG  60
CSHGESCRYA HSEEELRPRP DGTWDPTSDR AKKLRKVADE VDEEPVTVDD SALDKCLVGL  120
PRGWASDRLK TFLHDKGVSY ATAKKKKGMT VGFVTFENIE QLKNAIEVLT ENQSGGKEIK  180
IADANRRSHQ KLNTERPVSD NGVATENGTS VDIPPGGTSA PEAAISSKKS VRDAVTPLAH  240
MPYNDQLEHK KNNIAQILKR LTRNARKACP TAIPLPDWVF KSKEIGGLPC KLEGILESPV  300
INGYRNKCEF SVGFSLEGKK TVGFMLGNFR EGVTAVEEPV DCLNVSEISC KYALMFQDFL  360
QSSSLPVWNR IDNCGFWRQF TVREGRCPDA QNAETQISEV MLIVQVCSTG VDEALMKDEF  420
DKLTVALEQG AATCLPPLPL TTIVVQDHKG ISNAAPADCP LIPLLVPKVD QSEGTVDKTR  480
IHDHISSLRF SISPTAFFQV NTLAAERLYT LAGDWANLNL GTLLFDVCCG TGTIGLTLAH  540
RVGMVVGIEM NESAVSDAQR NALINGVKNC RFVCGKAEDV MGSLLTEYLG SPQQDIPVSE  600
GEVSGSVKDE EVIDGSQRSE NMDSSKEKND SGENQELRDT PPDCPAVIDE IKGNSSYRVS  660
NGLEGSHDEY KEPVGEDTCG EASSINESVD LKVSDSLEDS KTCHDGSSIP NNDVTATTAC  720
QFQDIVAIVD PPRVGLHPTV IKALRTHPRI RRLVYISCNP DSLVANAIEL CTPSSERQEK  780
NKGNRGWRTM SSAGLARQRT KSMPNSEPFV PKKAMAVDLF PHTSHCEMVM LFER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xj1_A5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5xj2_A5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5xj2_B5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5xj2_C5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5xj2_D5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5zq0_A5e-16481587266372Uncharacterized RNA methyltransferase SP_1029
5zq1_A5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5zq8_A5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5zq8_B5e-16481587265371Uncharacterized RNA methyltransferase SP_1029
5zth_A5e-16481587266372Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB04G10320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1201560.0AK120156.1 Oryza sativa Japonica Group cDNA clone:J013030B09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652071.20.0PREDICTED: zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S30.0C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLJ3LV570.0J3LV57_ORYBR; Uncharacterized protein
STRINGOB04G10320.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.10.0C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]