PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G48550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 119aa MW: 13130.1 Da PI: 6.605 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.5 | 1.5e-08 | 3 | 48 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W+ + +++ +a + + g+ +W+++a+ +g g+t+ +++ ++ OB03G48550.1 3 AWSDSDNQRFERALATYDGDtpgRWELVAAAVGGGKTADDVRRHYE 48 7*******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 3.0E-4 | 1 | 53 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 9.976 | 1 | 55 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.04E-9 | 3 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 3 | 49 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.71E-6 | 3 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MAAWSDSDNQ RFERALATYD GDTPGRWELV AAAVGGGKTA DDVRRHYERL EADLHRPPGR 60 GELVAAAVGG GKTADDVRRH YERLEADLHR IESESGPHRH HDDATQSNGH HTNNTGKRA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G48550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3LUX9 | 3e-80 | J3LUX9_ORYBR; Uncharacterized protein | ||||
STRING | OB03G48550.1 | 5e-81 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-16 | RAD-like 6 |