PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G48220.1
Common NameLOC102717506
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 307aa    MW: 32978.3 Da    PI: 10.9197
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G48220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC38.91.8e-122032881499
         NF-YC  14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                   +d    ++P+ar+++i++a++   + s ea  l+ ka e+f+ +++  ++ +a + +++++   ++++av + + ++fl d vp++
  OB03G48220.1 203 ADHGAGSFPMARVRQIMRAEDATVRPSNEAVFLINKATEIFLKKFAEDAYQNALKDRKKSIVYDNLSTAVCNQNRYKFLSDFVPQK 288
                   5566678**************9999**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.55E-18193288IPR009072Histone-fold
PfamPF008081.4E-13209272IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.0E-21210287IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MAGKKKAVTN PASASTSTST PAANERSAPK PRKNPKEEGA PPATTNKKKR DNPAAQGGSK  60
RKKKQEASAE AGTPAKKAKR QEAEPKPRKH KGAKTEKQQQ LSGEVEKPTP SEKKNKEAKH  120
EKEQPSGGAG KPASPAPKPT PSKKKSKEAK PEKQQSAGGA GKPTPTKRKL GDVQERASGE  180
GQPRSPTPTP TKKRKDKAAA AAADHGAGSF PMARVRQIMR AEDATVRPSN EAVFLINKAT  240
EIFLKKFAED AYQNALKDRK KSIVYDNLST AVCNQNRYKF LSDFVPQKVT AEDALKAPVI  300
SQVNQPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14763KKRDNPAAQGGSKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G48220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1036071e-149AK103607.1 Oryza sativa Japonica Group cDNA clone:J033133H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650910.10.0PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1
TrEMBLJ3LUU60.0J3LUU6_ORYBR; Uncharacterized protein
STRINGOB03G48220.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128261922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-27nuclear factor Y, subunit C10