PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G47560.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 390aa    MW: 42242.9 Da    PI: 4.6661
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G47560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.8e-188119299
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkya...tgkrknratk......sgyW 83 
                    pGfrF+P+d+ l++ +L++k++++++e+ ++++++d+y+ +P +L  +      ++++++ wyfF++ + +++   +g r++ra+       +++W
  OB03G47560.1   8 DPGFRFRPSDDGLITLFLRPKIAEEPFEE-RIVNNADVYSEDPAELVgQhtpapGTQGNKSVWYFFCPPRYTSKrasSGGRRQRAVGggggggESVW 103
                   69************************999.89**************7435666655567779*****97654442226889999855444444778* PP

           NAM  84 katgkdkevlskkgel 99 
                   k+ g +k+v++++g+ 
  OB03G47560.1 104 KSEGGKKPVKDADGRR 119
                   *********9976655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-225120IPR003441NAC domain
PROSITE profilePS5100521.1457177IPR003441NAC domain
PfamPF023655.9E-109113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MADGIALDPG FRFRPSDDGL ITLFLRPKIA EEPFEERIVN NADVYSEDPA ELVGQHTPAP  60
GTQGNKSVWY FFCPPRYTSK RASSGGRRQR AVGGGGGGGE SVWKSEGGKK PVKDADGRRV  120
RPPRRLPPEV ILRRVRVVGV GTHLHEAGVV HDGVQSRRRR RRSREAGALQ VLPLASRGGT  180
TQRAAAARGR ERARAAELTA GRAFADDGVA GGGSEDEFLQ TEQQQPELQL DFDLEGMEAL  240
LSSPVDENLT RQFSTTTDEQ CMRYLFHDEP LPCAPTVEVA GAGIEDGLIQ TEHEKTQSPP  300
AFYLEGVLPA PTDQNLIGQS STAMEEQCTR YPFDDDIDVP CPWTSTPAEV VDGGRGDELI  360
QTANGLRADA DIITLLAAGQ TVDDIFGADQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156163RRRRRRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G47560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3LUN00.0J3LUN0_ORYBR; Uncharacterized protein
STRINGOB03G47560.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.24e-10NAC domain containing protein 47