PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G47410.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 383aa    MW: 41998 Da    PI: 6.2211
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G47410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06156177223
                   EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                    C  Cgk F+r  nL+ H+r H
  OB03G47410.1 156 FCAVCGKGFKRDANLRMHMRGH 177
                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.21E-5153181No hitNo description
PROSITE profilePS5015712.009155182IPR007087Zinc finger, C2H2
SMARTSM003550.014155177IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-5157180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035542208241IPR015880Zinc finger, C2H2-like
SMARTSM0035535246268IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MTSGVDQFSN INQAMYLQPD QDFSQMIMEL CDLDGSSTTQ GRHVGEAADA EQSSCDVGAV  60
LTYLTFLEQK IGHLRGIISS TPHPPPQIVS AELSCIVVQL VSISKNLAAG RGGEDADAKN  120
YGSDGDDGDG EHLPVRGSYE VVQIEKEEIL APHVHFCAVC GKGFKRDANL RMHMRGHGDE  180
HKSAAALAKP GRSPPPTPAT DTARRCFYSC PYVGCKRNRE HKSFQPLKTP ICVKNHYRRS  240
HCDKSFTCRR CNVKKFSVLA DLRTHEKHCG RDRWVCSCGT SFSRKDKLFG HVAVFDGHTP  300
ALPPEEYDDE ATTAAGSDAM SCSGQLQHGG EAVNRMVDTD KCFSESIFDG LRCSDIRGSM  360
DDGHDYCDFD GIDLFAAATF DFL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G47410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044870.0AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAK2876050.0AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652000.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I62e-97STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLJ3LUL50.0J3LUL5_ORYBR; Uncharacterized protein
STRINGOB03G47410.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-99C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]