PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G47140.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 413aa    MW: 44924.4 Da    PI: 4.0345
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G47140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM64.92.3e-2081412128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdke 91 
                    pG+rF P+d+ l++ +L++k++++++e+ ++++++d+y+ +P +L +       ++++++ wyfF++ + ++   kr+      +++Wk+ g +k+
  OB03G47140.1   8 DPGCRFLPSDDGLITLFLRPKIAEEPFEE-RIVNNADVYSEDPAELVAqhtrvpGTQGNTSVWYFFCPPRYTS---KRAGAgGGGESVWKSEGGKKP 100
                   69************************999.89**************7435655544456679******86644...333332556899********* PP

           NAM  92 vlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                   v++++g+ vg  + + +     +g+a++ ++  W+m ey+l
  OB03G47140.1 101 VKAADGRRVGNLQKFSYGvyesTGSARTFTRLGWCMTEYSL 141
                   ***********9999996557778999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-295159IPR003441NAC domain
PROSITE profilePS5100529.1937159IPR003441NAC domain
PfamPF023656.5E-139141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MADGIALDPG CRFLPSDDGL ITLFLRPKIA EEPFEERIVN NADVYSEDPA ELVAQHTRVP  60
GTQGNTSVWY FFCPPRYTSK RAGAGGGGES VWKSEGGKKP VKAADGRRVG NLQKFSYGVY  120
ESTGSARTFT RLGWCMTEYS LDDDAIGAEK QVLCKVYRSP RALCAEARTA AAGSPCSGSK  180
RKADDAVGDL PEAPPSARPR QEAGSEYEHE QPDLPPDEPL PRAPMMEVAG GGSEDEFIQT  240
EQQQPELHLD FDLEGMEALL SDPVDENLTW QSSTATEEQC TRYPFDDDID VPWPWTSTSA  300
EVVDGGRGDE RIQTEHEQPQ SPPDFDLEGV LPAPTDQNLI GQSSTVMEEQ CTRYLFDDDV  360
DVSWPWTPTA AKVVDGGRGD GLIPTVNGLR ADADIISLLA AGQTVDDIFG ADQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G47140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0966872e-81AC096687.5 Oryza sativa chromosome 3 BAC OSJNBa0010E04 genomic sequence, complete sequence.
GenBankAP0149592e-81AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629679.11e-101NAC transcription factor NAM-2
RefseqXP_015690150.11e-102PREDICTED: protein FEZ-like
TrEMBLJ3LUI80.0J3LUI8_ORYBR; Uncharacterized protein
STRINGOB03G47140.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-14NAC family protein