PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G46930.1 | ||||||||
Common Name | LOC107303819 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 199aa MW: 21335.6 Da PI: 4.2759 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 36.2 | 1.9e-11 | 10 | 141 | 7 | 123 |
NAM 7 FhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 F+P de+l + yL+ + +++ ++++++ +d+y++ P +L + + +++ + wy Fs+ + ++g rk r++ + W+a OB03G46930.1 10 FSPDDEQLTDSYLQSYLVRSSlsdlpPVVSSFFHVADVYSAPPDELLAgldpapgTGDGDGRVWYLFSPVRVLGSRGARKARTVVgagggNECWHAE 106 9**************998888667643444568999**********7446776655555778********************63334332446**** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvm 123 g +++ + + + g + + + ++a+ +k W+m OB03G46930.1 107 GGPRDIEK--SGAGGKLQKFSYKIKTASGVVKPGWLM 141 ******98..455677788888888888888999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.717 | 4 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-6 | 9 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.97E-17 | 10 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDGFGSRLVF SPDDEQLTDS YLQSYLVRSS LSDLPPVVSS FFHVADVYSA PPDELLAGLD 60 PAPGTGDGDG RVWYLFSPVR VLGSRGARKA RTVVGAGGGN ECWHAEGGPR DIEKSGAGGK 120 LQKFSYKIKT ASGVVKPGWL MVLALGDQEH EGDGEFDERA DPESWEWENY LSAVLNETCK 180 QETLATAAAG QPPEETAVL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G46930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015690139.1 | 1e-144 | PREDICTED: uncharacterized protein LOC107303819 | ||||
TrEMBL | J3LUG7 | 1e-143 | J3LUG7_ORYBR; Uncharacterized protein | ||||
STRING | OB03G46930.1 | 1e-143 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6280 | 15 | 45 |
Link Out ? help Back to Top | |
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Entrez Gene | 107303819 |