PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G46690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 21293.7 Da PI: 4.0331 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 45.3 | 2.8e-14 | 8 | 94 | 2 | 80 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkya...tgkrknratks 80 pG++F+P+d l++ +L++k++++++e+ ++++++d+y+++P +L + +++++ wyfF++ + +++ +g r++ra++ OB03G46690.1 8 DPGCHFRPSDGGLITLFLRPKIAEEPFEE-RIVNNADVYSSDPVELVgQhtpapGTQGNTGVWYFFCPPRYTSKhasSGGRRQRAVAG 94 69************************999.89**************7435665544445559*****976555422367788887654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-17 | 5 | 95 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 13.439 | 7 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-7 | 9 | 85 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MADGIALDPG CHFRPSDGGL ITLFLRPKIA EEPFEERIVN NADVYSSDPV ELVGQHTPAP 60 GTQGNTGVWY FFCPPRYTSK HASSGGRRQR AVAGGGSEDE VPPPLDSLDF DLEALLSSPV 120 DENLTRQFST VTDEQCMRYL LDDEPLPCTA PTTMEVAGAG GGDNALIQTT RGACMDSEFI 180 ALLAAGHTVD ELLGPADPIS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G46690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3LUE3 | 1e-144 | J3LUE3_ORYBR; Uncharacterized protein | ||||
STRING | OB03G46690.1 | 1e-145 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4363 | 21 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 3e-08 | NAC domain containing protein 47 |