PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G46020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 134aa MW: 14163.5 Da PI: 10.0639 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.6e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H OB03G46020.1 94 HECHICGQGFEMGQALGGHMRRH 116 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.9E-5 | 47 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.3E-11 | 93 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.31E-6 | 93 | 120 | No hit | No description |
PROSITE profile | PS50157 | 10.596 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MTKHPRDGGV SLSLSLSLGA AAAAAAEAAK KXXXXXXXXX XXXXXXRAFP SFQALGGHRT 60 SHLRGRHGLA LCLAAATVKE APKKAEEKPA AATHECHICG QGFEMGQALG GHMRRHRDEA 120 AAVQAPPVLL ELFV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G46020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104433 | 6e-98 | AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence. | |||
GenBank | AK119690 | 6e-98 | AK119690.1 Oryza sativa Japonica Group cDNA clone:002-157-B05, full insert sequence. | |||
GenBank | AP014959 | 6e-98 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY286473 | 6e-98 | AY286473.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP15 mRNA, complete cds. | |||
GenBank | AY305864 | 6e-98 | AY305864.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP37 (ZFP37) mRNA, complete cds. | |||
GenBank | CP012611 | 6e-98 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | CT833140 | 6e-98 | CT833140.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA212G11, full insert sequence. | |||
GenBank | EU280899 | 6e-98 | EU280899.1 Oryza sativa Indica Group zinc finger protein (MM874) gene, complete cds; mitochondrial. | |||
GenBank | EU280900 | 6e-98 | EU280900.1 Oryza sativa Japonica Group zinc finger protein (MM874-2) gene, complete cds. | |||
GenBank | HQ858846 | 6e-98 | HQ858846.1 Oryza sativa Japonica Group isolate UT1603 C2H2 transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651964.1 | 1e-57 | PREDICTED: zinc finger protein ZAT12-like | ||||
TrEMBL | J3LU76 | 6e-75 | J3LU76_ORYBR; Uncharacterized protein | ||||
STRING | OB03G46020.1 | 9e-76 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 2e-13 | C2H2 family protein |