PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G46010.1 | ||||||||
Common Name | LOC102710192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 18014.2 Da PI: 8.2685 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F++ L H +H OB03G46010.1 50 FVCKTCGRAFPSFQALGGHRTSH 72 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.6 | 0.00041 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H OB03G46010.1 103 HECHICGLGFEMGQALGGHMRRH 125 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.19E-6 | 46 | 76 | No hit | No description |
PROSITE profile | PS50157 | 10.596 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.0E-10 | 50 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.37E-5 | 100 | 128 | No hit | No description |
SMART | SM00355 | 0.49 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.0E-11 | 103 | 128 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0080134 | Biological Process | regulation of response to stress | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MKHPRQHDDE VSLALALSTD SSSDSSAAPG RKRKARRRSH VVPTSGEGEF VCKTCGRAFP 60 SFQALGGHRT SHLRGRTNGL ELGAVGDRAI RQHRAEKEHR EKHECHICGL GFEMGQALGG 120 HMRRHREEMA AGGIGSSADD WVWRCDARPE EVAAETPVLL ELFA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in oxidative stress response. {ECO:0000269|PubMed:14722088}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00041 | PBM | Transfer from AT3G46090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G46010.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), heat stress, wounding and cucumber mosaic virus (CMV). {ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104433 | 1e-134 | AC104433.8 Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence. | |||
GenBank | AK068861 | 1e-134 | AK068861.1 Oryza sativa Japonica Group cDNA clone:J013170H07, full insert sequence. | |||
GenBank | AP014959 | 1e-134 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY286474 | 1e-134 | AY286474.1 Oryza sativa (japonica cultivar-group) zinc finger protein ZFP182 mRNA, complete cds. | |||
GenBank | CP012611 | 1e-134 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. | |||
GenBank | CT829316 | 1e-134 | CT829316.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI011O15, full insert sequence. | |||
GenBank | CT829317 | 1e-134 | CT829317.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI016A02, full insert sequence. | |||
GenBank | CT829318 | 1e-134 | CT829318.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021E01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006650804.1 | 1e-117 | PREDICTED: zinc finger protein ZAT8-like | ||||
Swissprot | Q42453 | 4e-19 | ZAT7_ARATH; Zinc finger protein ZAT7 | ||||
TrEMBL | J3LU75 | 1e-115 | J3LU75_ORYBR; Uncharacterized protein | ||||
STRING | OB03G46010.1 | 1e-116 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 3e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 102710192 |