PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G45870.1
Common NameLOC102708508
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 426aa    MW: 46745.5 Da    PI: 9.1041
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G45870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.5e-18112161155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  OB03G45870.1 112 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 161
                   78*******************......55************************998 PP
2AP242.12.2e-13204254155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+++GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ +++g
  OB03G45870.1 204 SKFRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDTEVEAARAYDRAAIRFNG 254
                   79********.7******...5...334336**********99**********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-16112170IPR016177DNA-binding domain
CDDcd000183.69E-11112171No hitNo description
PfamPF008477.9E-10112161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-17113170IPR001471AP2/ERF domain
SMARTSM003805.4E-31113175IPR001471AP2/ERF domain
PROSITE profilePS5103217.912113169IPR001471AP2/ERF domain
PfamPF008471.1E-8204254IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17204262IPR016177DNA-binding domain
CDDcd000188.73E-26204264No hitNo description
PROSITE profilePS5103216.041205262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-16205262IPR001471AP2/ERF domain
SMARTSM003804.5E-33205268IPR001471AP2/ERF domain
PRINTSPR003677.1E-6206217IPR001471AP2/ERF domain
PRINTSPR003677.1E-6244264IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MVLDLNVASP ERSGTSSSSV LNSGDAGVVE GGFRFDFLGS SPDEDECSGK AAPVASGVVT  60
RQLLPPPPLL PAPAPAPLTT AWQPRRPAED AGLAQRAVVA KKTRRGPRSR SSQYRGVTFY  120
RRTGRWESHI WDCGKQVYLG GFDTAQAAAR AYDRAAIKFR GLDADINFNL SDYEDDLKQM  180
RNWTKEEFVH ILRRQSTGFA RGSSKFRGVT LHKCGRWEAR MGQLLGKKYI YLGLFDTEVE  240
AARAYDRAAI RFNGREAVTN FEPTAYNVDT LPDAGNEVIV DSDVLDLDLR ISQPNVSDSK  300
RVATITGLQL TCDSPQSSNT MVHQPMGSSP QWTVHHQSTS LPSQHQRLYP SACLGFVPNL  360
QERPVERRPE LGPLPFPTQG WQMQGPSHLP LLHAAASSGF SAGAGATALR RQPPFPAHPF  420
YFPPTA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G45870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851130.0AY685113.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D2 (AP2D2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650798.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotQ84TB50.0AP22_ORYSJ; APETALA2-like protein 2
TrEMBLJ3LU610.0J3LU61_ORYBR; Uncharacterized protein
STRINGOB03G45870.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-88AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]