PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G45650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 171aa MW: 17950.5 Da PI: 10.5244 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29 | 2.7e-09 | 19 | 64 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ g + +g r+r +lg+f+taeeAa+a+ aa +l+ OB03G45650.1 19 RFRGVRQRP-GGG-------VGAGGrARRRLWLGTFDTAEEAAAAYNAASIRLR 64 589999999.555.......32234556********************988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.35E-10 | 19 | 73 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-14 | 19 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-12 | 19 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-5 | 19 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.172 | 19 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEAGRIGEAA ASGTRPAARF RGVRQRPGGG VGAGGRARRR LWLGTFDTAE EAAAAYNAAS 60 IRLRCSSNTT TNFCSVRCYS PPELAKPTIQ SSEAVRPITL PIGPAKPTLL PQVKEEGASC 120 GGRVKEEGSS CEVQAPMWTM ISGKRKKRSG CGTRVRAFHA VSACLEEVGG A |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G45650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133007 | 1e-113 | AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence. | |||
GenBank | AC139172 | 1e-113 | AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence. | |||
GenBank | AK068252 | 1e-113 | AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence. | |||
GenBank | AP014959 | 1e-113 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CU406213 | 1e-113 | CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651952.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | J3LU39 | 1e-118 | J3LU39_ORYBR; Uncharacterized protein | ||||
STRING | OB03G45650.1 | 1e-119 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |