PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G44270.1

Common Name

LOC102712067

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 421aa MW: 43544.9 Da PI: 4.7128

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G44270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43	9.8e-14	231	283	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 + +rrkq+NRe+ArrsR RK a + eLe v++L eN++L +l ++++ OB03G44270.1 231 RLQRRKQSNRESARRSRSRKAAHLNELEAQVAQLRVENSSLLRRLADVNQKYN 283 789***************************************99988888776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.3E-17	227	291	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-10	228	283	No hit	No description
PROSITE profile	PS50217	11.392	229	283	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-11	231	282	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-9	231	281	No hit	No description
Pfam	PF12498	1.1E-49	298	414	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071215	Biological Process	cellular response to abscisic acid stimulus
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MDRVFSVEEI SDTYWVPQPS SAAAPQQEGG SAAAASGGAG VAGAGSGGGG NAMNRCPSEW 60 YFQKFLEEAV LDSPVENPSP GPGAGVVSGA GGVVPVDVKQ PQMAAAATGA GGGHPMEYNA 120 ILKQKLEKDL AAVSAMWRAS GAMPPDRSAA GPSLPSAEVS QIGAPNSIGG NVIPVQNKLS 180 GPSGGSGSQL VQNVDVLIKQ PTSSSSREQS DDDDMEGEAE TTGSANPSDQ RLQRRKQSNR 240 ESARRSRSRK AAHLNELEAQ VAQLRVENSS LLRRLADVNQ KYNDAAVDNR VLKADVETLR 300 AKVKMAEDSV KRVTGMNALF PAASDVSSLS MPFNGSSSEA TSDAAVPIQD DPNNYFAANN 360 DVAGNNYMPD ITSSAQDDED FVNGALAAGK IGRTASLQRV ASLEHLQKRM CGGPASSGST 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MDRVFSVEEI SDTYWVPQPS SAAAPQQEGG SAAAASGGAG VAGAGSGGGG NAMNRCPSEW  60
YFQKFLEEAV LDSPVENPSP GPGAGVVSGA GGVVPVDVKQ PQMAAAATGA GGGHPMEYNA  120
ILKQKLEKDL AAVSAMWRAS GAMPPDRSAA GPSLPSAEVS QIGAPNSIGG NVIPVQNKLS  180
GPSGGSGSQL VQNVDVLIKQ PTSSSSREQS DDDDMEGEAE TTGSANPSDQ RLQRRKQSNR  240
ESARRSRSRK AAHLNELEAQ VAQLRVENSS LLRRLADVNQ KYNDAAVDNR VLKADVETLR  300
AKVKMAEDSV KRVTGMNALF PAASDVSSLS MPFNGSSSEA TSDAAVPIQD DPNNYFAANN  360
DVAGNNYMPD ITSSAQDDED FVNGALAAGK IGRTASLQRV ASLEHLQKRM CGGPASSGST  420
S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00040	PBM	Transfer from AT5G28770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G44270.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006650731.1	0.0	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q7X9A8	0.0	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	J3LTQ1	0.0	J3LTQ1_ORYBR; Uncharacterized protein
STRING	OB03G44270.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-36	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102712067

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]