PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB03G43000.1

Common Name

LOC102708790

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 1144aa MW: 129919 Da PI: 7.8659

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB03G43000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.2	2.5e-08	54	130	2	63
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCk 63 fY Y+ ++GF+ r+ ++++s ng +++++f Cs+ ++++++k+ + k++r ++++ +Ck OB03G43000.1 54 FYYGYGDRLGFKARTGSNRRSVGNGVMIMQRFLCSRGNYANRRNKAngldelkeeevqecaAGKRKRGANNKKKDCK 130 9************************************9999999987777777777666665555555556666665 PP
2	FAR1	74.9	1.7e-23	373	458	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y +YA +vGFsvrk +k+ + + + +r +vCskeg+r+++ ++ + +++r+etrtgC+a++++k + ++k++vt+ +HnH+l OB03G43000.1 373 CYVTYAGTVGFSVRKGWLEKTAT-NITRSRAYVCSKEGFRSKSVTT--DPKKPRSETRTGCQAHMTIKITVSSKYVVTEYAADHNHDLE 458 7*****************955.55999*********9988..999*********************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-5	54	130	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.3E-21	373	458	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-22	558	652	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.484	827	874	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-8	827	872	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-9	849	876	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1144 aa Download sequence Send to blast
MMEVVKKDAV GGKWRVSKLV VEHNHELEVA PGEVAAAVPV LGMEFDSVHA AKGFYYGYGD 60 RLGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN GLDELKEEEV QECAAGKRKR 120 GANNKKKDCK PVKNGSEVIE VGSSVEKGVG IAGSKNGQEM RKTRGSTRGR SKKDVIQKDG 180 GSVVQLEAER EDMAMAQDGD DDEEQEQKWE EEMEEEVQVE VKGKRGRGRP RKADTDGNAL 240 QARVLRELGL RASQYTNEER KKIVNKYLSK RQSRPVSGRP AKIASRQALA ERRKRGDGGR 300 FLASEGLAPP EQPSERRSKR LEKQNLKKED KDESKEDEII EVEPDPETEV VAGPGGEPKV 360 GMVFLNEDKA YDCYVTYAGT VGFSVRKGWL EKTATNITRS RAYVCSKEGF RSKSVTTDPK 420 KPRSETRTGC QAHMTIKITV SSKYVVTEYA ADHNHDLEAP LVDIQVLRSQ KLLAKLQQPL 480 DPPRVVFIPH DYKNYARTRQ SKDMQLGDAQ VICEYLQRKK GEHPSFFYAI QVDEDDQLTN 540 IFWADVKSIL DYNYFGDVVC VDTRYSTGNH VRPLLLFIGV NHHKQPIIFG AALVYYESVE 600 SFKWLLETFK SAMSGKQPKT VMIDQSTAIS EAVGSVWPGT TQRFSLIHLY ENATKILNNT 660 FQASETFAED FSRWLYCYEE EEDFMSSWEI LSEKYNLKDN EWLGKLYADR ERWALPYGRD 720 TFCADIAATL RSDNNTDTML ADILKKEMDF PSFFNNYDKL LEEKRLAEQQ ADYLGVQMTQ 780 RIAPLRMLWQ AANAYTPALF EMFRLEFELT LTCMVYSCGE IAPISEYEVT VKNRPRGHFV 840 RFDSSECMVA CSCKKFEFTG IPCCHVLKVL EVRNIKELPP HYILKRWRKD AQSESPKENY 900 GFEAADGDPK FSLSKRYNML YRMLCKIAAK AAENIEAYTY MESQYDQFLE QVELLLQAKL 960 HDRSSLSTIM KVQQQNLLPE ASNSEPRRVS SKKNKNVEMR RQQQSPIQSN KKKKGRQGLL 1020 EPEEAEVPLR VDPATISNDI PNHLRTPTSQ FLAPSHIIQA PYVAQQFGLG SLQGFPGISP 1080 FGQETAPAPL QQPHLQQPPF HSGPQIPQAP PPDIQSLQFL SSNPQLGHQT TDQSQYTIPV 1140 WDFL

Sequence ? help Back to Top

Protein Sequence Length: 1144 aa Download sequence Send to blast

MMEVVKKDAV GGKWRVSKLV VEHNHELEVA PGEVAAAVPV LGMEFDSVHA AKGFYYGYGD  60
RLGFKARTGS NRRSVGNGVM IMQRFLCSRG NYANRRNKAN GLDELKEEEV QECAAGKRKR  120
GANNKKKDCK PVKNGSEVIE VGSSVEKGVG IAGSKNGQEM RKTRGSTRGR SKKDVIQKDG  180
GSVVQLEAER EDMAMAQDGD DDEEQEQKWE EEMEEEVQVE VKGKRGRGRP RKADTDGNAL  240
QARVLRELGL RASQYTNEER KKIVNKYLSK RQSRPVSGRP AKIASRQALA ERRKRGDGGR  300
FLASEGLAPP EQPSERRSKR LEKQNLKKED KDESKEDEII EVEPDPETEV VAGPGGEPKV  360
GMVFLNEDKA YDCYVTYAGT VGFSVRKGWL EKTATNITRS RAYVCSKEGF RSKSVTTDPK  420
KPRSETRTGC QAHMTIKITV SSKYVVTEYA ADHNHDLEAP LVDIQVLRSQ KLLAKLQQPL  480
DPPRVVFIPH DYKNYARTRQ SKDMQLGDAQ VICEYLQRKK GEHPSFFYAI QVDEDDQLTN  540
IFWADVKSIL DYNYFGDVVC VDTRYSTGNH VRPLLLFIGV NHHKQPIIFG AALVYYESVE  600
SFKWLLETFK SAMSGKQPKT VMIDQSTAIS EAVGSVWPGT TQRFSLIHLY ENATKILNNT  660
FQASETFAED FSRWLYCYEE EEDFMSSWEI LSEKYNLKDN EWLGKLYADR ERWALPYGRD  720
TFCADIAATL RSDNNTDTML ADILKKEMDF PSFFNNYDKL LEEKRLAEQQ ADYLGVQMTQ  780
RIAPLRMLWQ AANAYTPALF EMFRLEFELT LTCMVYSCGE IAPISEYEVT VKNRPRGHFV  840
RFDSSECMVA CSCKKFEFTG IPCCHVLKVL EVRNIKELPP HYILKRWRKD AQSESPKENY  900
GFEAADGDPK FSLSKRYNML YRMLCKIAAK AAENIEAYTY MESQYDQFLE QVELLLQAKL  960
HDRSSLSTIM KVQQQNLLPE ASNSEPRRVS SKKNKNVEMR RQQQSPIQSN KKKKGRQGLL  1020
EPEEAEVPLR VDPATISNDI PNHLRTPTSQ FLAPSHIIQA PYVAQQFGLG SLQGFPGISP  1080
FGQETAPAPL QQPHLQQPPF HSGPQIPQAP PPDIQSLQFL SSNPQLGHQT TDQSQYTIPV  1140
WDFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	231	KRGRGRPRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB03G43000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120460	0.0	AK120460.1 Oryza sativa Japonica Group cDNA clone:J013106N05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015690835.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	J3LTC4	0.0	J3LTC4_ORYBR; Uncharacterized protein
STRING	OB03G43000.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-107	FAR1-related sequence 5

Link Out ? help Back to Top
Entrez Gene	102708790