PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G42600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 442aa    MW: 47757.9 Da    PI: 8.5727
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G42600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.81.2e-12327383155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  OB03G42600.1 327 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 383
                   78*******************77776664346655.77******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.86E-18327391No hitNo description
PfamPF008476.9E-10327383IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-14327392IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.1E-13328392IPR001471AP2/ERF domain
SMARTSM003808.3E-23328397IPR001471AP2/ERF domain
PROSITE profilePS5103217.359328391IPR001471AP2/ERF domain
PRINTSPR003673.7E-5329340IPR001471AP2/ERF domain
PRINTSPR003673.7E-5373393IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MASGSNSSGS IAATAGGGGG GSWLGFSLSP HMAAATPCAG VDDVGHHHVH QHHHHHQQQQ  60
HGGGGLFYSP AAVASSFYYG GLGAGHDGVV TSAAAASGGY YAAGFSSMPL KPDGSLCVME  120
ALPGSDQEQH GVVVSASPKL EDFLGAGPAM APSPAXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXA ADGGGGGIMP VHPLTLSMSS AGSQSSCVTV QAAAGAPHGG EAYMSVDAVS  300
KKRGTDRGGQ KQPVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR  360
QGGYDMEEKA ARAYDLAALK YWGPSTHINF PLEDYQEELE EMKNMSRQEY VAHLRRKSSG  420
FSRGASIYRG VTRSLITLKM FY
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G42600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753188e-97AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879550.11e-97AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z027e-79CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLJ3LT841e-123J3LT84_ORYBR; Uncharacterized protein
STRINGOB03G42600.11e-124(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.15e-78AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]