PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G41340.1
Common NameLOC102716673
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 575aa    MW: 63859.1 Da    PI: 7.5395
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G41340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.26e-11116156445
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      W ++E+ ll+++++++G g+W+ +a+++g ++   qc++++ 
     OB03G41340.1 116 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKGKAQCIDHYT 156
                      *****************************.9*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250246.9E-18244571IPR016827Transcriptional adaptor 2
SMARTSM002911.6E-105297IPR000433Zinc finger, ZZ-type
PfamPF005693.3E-95495IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.8245699IPR000433Zinc finger, ZZ-type
SuperFamilySSF578503.65E-1456119No hitNo description
CDDcd023353.22E-2656104No hitNo description
PROSITE patternPS0135705885IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.72E-11109162IPR009057Homeodomain-like
PROSITE profilePS5129321.483111163IPR017884SANT domain
SMARTSM007179.8E-10112161IPR001005SANT/Myb domain
PfamPF002491.1E-10115156IPR001005SANT/Myb domain
CDDcd001671.99E-10116157No hitNo description
Gene3DG3DSA:1.10.10.602.2E-7116158IPR009057Homeodomain-like
SuperFamilySSF466894.48E-21473564IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MGRSRGVPNS GDDDTNHRSK RRRVASSGDA SDSLSAAGGG GGGGGGGEGG GKKALYHCNY  60
CNKDISGKIR IKCSKCPDFD LCVECFSVGA EVTPHRSNHP YRVMDNLSFP LICPDWNADE  120
EILLLEGIEM YGLGNWAEVA EHVGTKGKAQ CIDHYTTAYM NSPCYPLPDM SHVNGKNRKE  180
LLAMAKVQGE SKKGTSVLPG DLTPKDESPF SPPRVKVEDA LGEGLAGRSP SHIASGANKK  240
ASNVGQFKDG ANVAKVEDGH VDRSIGVKKP RYSADEGPSL TELSGYNSKR NEFDPEYDND  300
AEQALAEMEF KETDSETDRE LKLRVLRIYL SRLDERKRRK EFILERNLLF PNPLEKDLTN  360
EDKEVYHRYK VFMRFLSKEE HEALVRSVLE ERKIRRRIQE LQECRSAGCR TLAEAKIHIE  420
QKRKKEHEVN AQKAKESGQL LSNTKVMHKT NRPMKIESDG NLDQKKGGAS LESGGRDSPK  480
TTGHAGTKHW DDWDIVGLPG AELLSANEKV LCCQNKLLPC HYLKMQEVLM QEIFKGSVAK  540
KEDAHVLFKV DPAKVDTVYD MVTKKLGTNE EAPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C2e-39561715120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2335340RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G41340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0725970.0AK072597.1 Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651826.10.0PREDICTED: transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLJ3LSV80.0J3LSV8_ORYBR; Transcriptional adapter
STRINGOB03G41340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]