PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G41340.1 | ||||||||
Common Name | LOC102716673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 575aa MW: 63859.1 Da PI: 7.5395 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.2 | 6e-11 | 116 | 156 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W ++E+ ll+++++++G g+W+ +a+++g ++ qc++++ OB03G41340.1 116 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKGKAQCIDHYT 156 *****************************.9*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 6.9E-182 | 44 | 571 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 1.6E-10 | 52 | 97 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 3.3E-9 | 54 | 95 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 10.824 | 56 | 99 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 3.65E-14 | 56 | 119 | No hit | No description |
CDD | cd02335 | 3.22E-26 | 56 | 104 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 58 | 85 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 1.72E-11 | 109 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 21.483 | 111 | 163 | IPR017884 | SANT domain |
SMART | SM00717 | 9.8E-10 | 112 | 161 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-10 | 115 | 156 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-10 | 116 | 157 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 116 | 158 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.48E-21 | 473 | 564 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MGRSRGVPNS GDDDTNHRSK RRRVASSGDA SDSLSAAGGG GGGGGGGEGG GKKALYHCNY 60 CNKDISGKIR IKCSKCPDFD LCVECFSVGA EVTPHRSNHP YRVMDNLSFP LICPDWNADE 120 EILLLEGIEM YGLGNWAEVA EHVGTKGKAQ CIDHYTTAYM NSPCYPLPDM SHVNGKNRKE 180 LLAMAKVQGE SKKGTSVLPG DLTPKDESPF SPPRVKVEDA LGEGLAGRSP SHIASGANKK 240 ASNVGQFKDG ANVAKVEDGH VDRSIGVKKP RYSADEGPSL TELSGYNSKR NEFDPEYDND 300 AEQALAEMEF KETDSETDRE LKLRVLRIYL SRLDERKRRK EFILERNLLF PNPLEKDLTN 360 EDKEVYHRYK VFMRFLSKEE HEALVRSVLE ERKIRRRIQE LQECRSAGCR TLAEAKIHIE 420 QKRKKEHEVN AQKAKESGQL LSNTKVMHKT NRPMKIESDG NLDQKKGGAS LESGGRDSPK 480 TTGHAGTKHW DDWDIVGLPG AELLSANEKV LCCQNKLLPC HYLKMQEVLM QEIFKGSVAK 540 KEDAHVLFKV DPAKVDTVYD MVTKKLGTNE EAPTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw2_C | 2e-39 | 56 | 171 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 19 | 23 | KRRRV |
2 | 335 | 340 | RKRRKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G41340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072597 | 0.0 | AK072597.1 Oryza sativa Japonica Group cDNA clone:J023128E10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651826.1 | 0.0 | PREDICTED: transcriptional adapter ADA2 | ||||
Swissprot | Q75LL6 | 0.0 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | J3LSV8 | 0.0 | J3LSV8_ORYBR; Transcriptional adapter | ||||
STRING | OB03G41340.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7708 | 38 | 47 |
Link Out ? help Back to Top | |
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Entrez Gene | 102716673 |
Publications ? help Back to Top | |||
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