PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G40300.1
Common NameLOC102704137
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 195aa    MW: 21518.3 Da    PI: 9.7002
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G40300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-1589125135
          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  OB03G40300.1  89 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 125
                   **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062033.3E-161858IPR010402CCT domain
PROSITE profilePS5101713.4931860IPR010402CCT domain
SMARTSM004013.8E-1083137IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-1186140No hitNo description
Gene3DG3DSA:3.30.50.104.6E-1487127IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.24E-1389139No hitNo description
PROSITE patternPS00344089116IPR000679Zinc finger, GATA-type
PfamPF003202.3E-1389125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MAVPTTFDEK STTVAARRVA SLMRFREKRK ERCFDKKIRY SVRKEVAQKM KRRKGQFAGR  60
ADFGDGSCSS APCGSTANGE DDHIRETHCQ NCGISSRLTP AMRRGPAGPR SLCNACGLMW  120
ANKGTLRSPL NAPKMIVQHP ADLSKTGDTD DSKTNLHAER NQTTTKIDSE MVAEQEQKAD  180
VLPPPTKEED SMATS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G40300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651787.21e-145PREDICTED: GATA transcription factor 19
RefseqXP_015691252.11e-145PREDICTED: GATA transcription factor 19
SwissprotQ0DNU11e-134GAT19_ORYSJ; GATA transcription factor 19
TrEMBLJ3LSK41e-143J3LSK4_ORYBR; Uncharacterized protein
STRINGOB03G40300.11e-144(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.16e-39ZIM-like 1