PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB03G39940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 423aa MW: 45768.7 Da PI: 6.7013 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 45.6 | 1.2e-14 | 72 | 98 | 1 | 27 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkkl 27 d+epgrCrRtDGKkWRCsr++++++k+ OB03G39940.1 72 DPEPGRCRRTDGKKWRCSRDAVADQKY 98 79************************8 PP | |||||||
2 | QLQ | 58 | 2.9e-20 | 6 | 42 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++ OB03G39940.1 6 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 42 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-11 | 6 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.6E-15 | 7 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.087 | 7 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 17.721 | 72 | 116 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.2E-11 | 73 | 98 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 423 aa Download sequence Send to blast |
MARVRGPFTP SQWIELEHQA LIYKYLAANS PVPHSLLIPI RRSLTSPYSP AYFGSSTLGW 60 GSFQLGYSGS ADPEPGRCRR TDGKKWRCSR DAVADQKYWA PAAASANQPS TPAAHGGGAA 120 SGLAVNHHQQ QMKNYTANTA NPCSLQYSRE LVNKHSESEQ GQDSDTLSML TSMNTRNTSS 180 LFPFSKQQHN PFEVSGSRSE FGLVSPDSLM SSPHSSLENV NLLTSQSLNE HQSSVSLQHF 240 VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLCRE 300 YSPIGLGAAA NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNVEARNC LSASLNLLND 360 GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGITNLRDDL GSIVVNHPSI 420 RLV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB03G39940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073578 | 0.0 | AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006651774.1 | 0.0 | PREDICTED: growth-regulating factor 6, partial | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | J3LSG8 | 0.0 | J3LSG8_ORYBR; Uncharacterized protein | ||||
STRING | OB03G39940.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-36 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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