PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G39940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRF
Protein Properties Length: 423aa    MW: 45768.7 Da    PI: 6.7013
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G39940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC45.61.2e-147298127
           WRC  1 daepgrCrRtDGKkWRCsrrvlegkkl 27
                  d+epgrCrRtDGKkWRCsr++++++k+
  OB03G39940.1 72 DPEPGRCRRTDGKKWRCSRDAVADQKY 98
                  79************************8 PP

2QLQ582.9e-20642137
           QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                  ++FT++Q+ +L++Q+l+yKyLaan PvP+ Ll +i++
  OB03G39940.1  6 GPFTPSQWIELEHQALIYKYLAANSPVPHSLLIPIRR 42
                  59*********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-11642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.6E-15741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.087742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166717.72172116IPR014977WRC domain
PfamPF088794.2E-117398IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MARVRGPFTP SQWIELEHQA LIYKYLAANS PVPHSLLIPI RRSLTSPYSP AYFGSSTLGW  60
GSFQLGYSGS ADPEPGRCRR TDGKKWRCSR DAVADQKYWA PAAASANQPS TPAAHGGGAA  120
SGLAVNHHQQ QMKNYTANTA NPCSLQYSRE LVNKHSESEQ GQDSDTLSML TSMNTRNTSS  180
LFPFSKQQHN PFEVSGSRSE FGLVSPDSLM SSPHSSLENV NLLTSQSLNE HQSSVSLQHF  240
VDWPRTPAQG ALAWPDAEDM QAQRSQLSIS APMASSDLSS ASTSPIHEKL MLSPLKLCRE  300
YSPIGLGAAA NRDEVNQGEA NWMPMFRDSL MGGPLGEVLT KNNNVEARNC LSASLNLLND  360
GWDSSSGFDS SPVGVLQKTT FGSVSSSTGS SPRLENHSVY DGITNLRDDL GSIVVNHPSI  420
RLV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB03G39940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735780.0AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006651774.10.0PREDICTED: growth-regulating factor 6, partial
SwissprotQ6AWY30.0GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLJ3LSG80.0J3LSG8_ORYBR; Uncharacterized protein
STRINGOB03G39940.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.12e-36growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]